PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G035400.1.p | ||||||||
Common Name | PRUPE_ppa020870mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 608aa MW: 65857.1 Da PI: 7.8945 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00043 | 64 | 84 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r+H Prupe.6G035400.1.p 64 CEVCNKGFSSGKALGGHMRMH 84 ********************9 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.2e-05 | 138 | 158 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F++ +L H+r+H Prupe.6G035400.1.p 138 CCVCGKNFPSMKSLFGHMRSH 158 9*******************9 PP | |||||||
3 | zf-C2H2 | 17.6 | 1e-05 | 431 | 453 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksF+++ L H+++H Prupe.6G035400.1.p 431 YKCSLCGKSFPSHQALGGHMSSH 453 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.11 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.723 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.8E-8 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.99E-5 | 63 | 86 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.33 | 136 | 158 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.432 | 136 | 163 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.46E-9 | 138 | 158 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.2E-6 | 138 | 160 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.46E-9 | 426 | 453 | No hit | No description |
Pfam | PF13912 | 8.9E-10 | 430 | 454 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7E-4 | 431 | 453 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.5E-4 | 431 | 455 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.843 | 431 | 458 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 433 | 453 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.93E-5 | 519 | 546 | No hit | No description |
Pfam | PF13912 | 1.5E-11 | 521 | 545 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.974 | 522 | 544 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.062 | 522 | 544 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 524 | 544 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MDVEDQETRF RPRAGDQEQQ PNKKTNQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF 60 TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKIK KPTKILKPNN SDVSSSNGGG 120 GFGVEGNSNS NSSMKPDCCV CGKNFPSMKS LFGHMRSHPE REWRGIQPPP TIAKNSSSST 180 LSDAVPQNNN KADDHQIDSA ATPVGSNNSA PDLSKTLPGW SLTARRGRKS IGSSGNSESV 240 SGLELSLGVE EQMEEAVHDL LMLAQSNPCF YGLSDKGKGA EMCEATNSNF FITNNSNQAD 300 YIKDKNQVID YEGTSKKRKG TEMCFPSKNM KSEKKWFDDY DGMKGKGVLG IGFGPEKPSV 360 KNFSKLGPME DNKNNNIEEE LSDSQNSESI VLASMKRRKR RKMKLIDLEG VVGEIIGAQG 420 HHQSLHQKLR YKCSLCGKSF PSHQALGGHM SSHNKLKNNN NNIIVNHSSL DDQSASADVS 480 AAEGGHNLDE AQTTMALDQD HHVAGAGSGS GAGGLGAHQA HHQCKICDKI FPTGQALGGH 540 KRCHWTGPTE QLLPQSSQAP SPGEASQNAG RKVLNFDLNE LPATEFEEGT DQYGAAGYAT 600 SSHNSVT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 395 | 401 | KRRKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G035400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020421024.1 | 0.0 | uncharacterized protein LOC18775198 | ||||
TrEMBL | A0A251NJR1 | 0.0 | A0A251NJR1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ07835 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 2e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G035400.1.p |
Entrez Gene | 18775198 |