PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 802aa    MW: 85294.9 Da    PI: 8.7515
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08244268226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+f++r+  C +G +C+F+H+
  Prupe.5G158800.1.p 244 GEKDCSFYMRNASCMFGTNCRFNHP 268
                         7889********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0031242269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638242270IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5244268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.22E-5245270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MLPSARLLLP AAAAAAPVLY RFYKYLRAEV IRVPQNPPEL SDLDLAILEE IRKLGPALLD  60
KILKDPALLD EFRKIDPAVL HEFRKLDPAI IGKILQSCLK DNKEGEEEAD RSTCSGRETA  120
KQNENGNEET EGGGGENKNE NGGEVEKKVV DEERSRSQHY PVRPGAGEGK TARKNRKNNQ  180
VSKDKMKERE GLAAEKPGQT ECKDYSRSGG RKYEKACSLN PGRGEPSVAP ILECNFLGLP  240
IRPGEKDCSF YMRNASCMFG TNCRFNHPDP TAARESEPPS GYGNGRSPAL QGASSSTAAP  300
WSAPRSLNDV PLYVPMVSPH VQIGSWGNAD GVWAQSELGN KDEASGWTKP AFINENQNDS  360
WNKPSGVDDN KRASWGKADG GSTWTKQDGD PTWNKQGEGS TWNKQDGSSA WNKPAGDSYW  420
SKQAGWSSWG KQADVTAGHE SGRVGNQDNG WKRASSFGGS QSIDGVNGDQ PEDFNNNRSG  480
GNWRGGSGRG NSDRGGFRGG RGFVGRGGDR EEDRGGFGRR WGFGGRGGDR GSFGGRGRSD  540
KGGFGGRGYG GRGRGRYQSG GCSNRNESID NNSSGWSKGA DGAGEGWRRD KGGGSWNHGS  600
KNDWQGRNSS GWSNQSSGWN QSDVTKEIGG SGSGWNQTVE AKYTAGTQDK GTGSHNEVGT  660
SWGNNWKSSD ASNGDQSSRW KQSTAAKEFK GNTDQDGGWN KGPSSNAQAG GWGNQGSGWN  720
KGTGSGFGGG TGEQPSAAVG GQSSDWKQSS AASRGQSSSW NQSGEAQGTD EGAKPTNSWG  780
KAAVASSWGK CSDGESSKGG W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419592.10.0protein RNA-directed DNA methylation 3 isoform X2
RefseqXP_020419593.10.0protein RNA-directed DNA methylation 3 isoform X2
RefseqXP_020419594.10.0protein RNA-directed DNA methylation 3 isoform X2
RefseqXP_020419595.10.0protein RNA-directed DNA methylation 3 isoform X2
RefseqXP_020419596.10.0protein RNA-directed DNA methylation 3 isoform X2
RefseqXP_020419597.10.0protein RNA-directed DNA methylation 3 isoform X2
TrEMBLA0A251P9740.0A0A251P974_PRUPE; Uncharacterized protein
STRINGXP_008239389.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3988722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.15e-27C3H family protein