PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 548aa    MW: 61031.1 Da    PI: 7.825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-09163186427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + Cr +++tGtCk+G++CkF+H++
  Prupe.5G158400.1.p 163 RDCRCYLKTGTCKFGPNCKFNHPR 186
                         79********************96 PP
2zf-CCCH27.26.9e-09274294626
                         -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                         C  +++tGtC++G++CkF+H+
  Prupe.5G158400.1.p 274 CWSYLKTGTCNFGPSCKFNHP 294
                         668*****************8 PP
3zf-CCCH24.83.8e-08345369226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C+++ ++G Ck G +C+F+H+
  Prupe.5G158400.1.p 345 GEKECPYYVKNGSCKSGTNCTFNHP 369
                         7899********************9 PP
4zf-CCCH261.6e-08469495127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C +f+r G Ck+ ++Ck++H++
  Prupe.5G158400.1.p 469 PGQPICIYFLRKGDCKHRSNCKYHHPK 495
                         5789*********************96 PP
5zf-CCCH192.4e-06516540226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C  ++ +G+C+ G+ CkF H+
  Prupe.5G158400.1.p 516 GENICTQYSSYGICNSGPACKFDHP 540
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.1E-4159186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183159187IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7162186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5162186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4165184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5267296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235268296IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072270295IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6274294IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136343371IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-6345369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5345370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108468496IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-4468495IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4470495IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5471497IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6513539IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034514541IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.713514542IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4516540IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLPAAAVRVL LPVSASVIYV IYRYLRSGRQ IESSPNTSNN DVVPPQNSGN SDVVPYPELS  60
DRDRTILAEI LKDNHVLLDK IRALEPAFLD GLRKFKPAVL REMVFDPAEL DPVIVDASRK  120
LSLKGGKEEG EENENGNLNE TKSEERDEER SRSRHYPVRP GARDCRCYLK TGTCKFGPNC  180
KFNHPRITTK NNQNSFRSGG RHPNLYTTPN PGNDDVLPPN SDIPSILGND DVFPQNPGDP  240
DRENGNRNET QSEERDKERS RIHHYPVRFE DGDCWSYLKT GTCNFGPSCK FNHPHRRKNR  300
KNNQNYFRSG GCKPGNAFSF NPRRGEPSVA PVQKLNFMDL PIRPGEKECP YYVKNGSCKS  360
GTNCTFNHPD PTAIGESGPP SGYIDGGPAS VQGASSATAW DSLCVPMIPP SQGIPSQNTE  420
WNGSQDPEYL PERSIPAPPP YVMNKAVTET NIYEQNPQQK QVEEFPERPG QPICIYFLRK  480
GDCKHRSNCK YHHPKNQTAV SPLCALSDKG LPLRPGENIC TQYSSYGICN SGPACKFDHP  540
SLSTFLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239394.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A251P9990.0A0A251P999_PRUPE; Uncharacterized protein
STRINGXP_008239394.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3988822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-81C3H family protein