PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G117000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 357aa MW: 39919.4 Da PI: 5.4028 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.7 | 5e-28 | 130 | 190 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK++ g+++prsYYrCt++ +C ++k+v+rs+edp+++eitY+g+H+++ Prupe.5G117000.1.p 130 EDGHSWRKYGQKDILGAKHPRSYYRCTYRntqSCYATKQVQRSDEDPTIFEITYKGKHTCS 190 8***************************98889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-28 | 124 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-25 | 128 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-39 | 129 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.597 | 130 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 130 | 189 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDSSKSWEHK SLLTEIIEGM ELAKQLRLSL SAASSSDTRQ FLVQRILSSY EKALLILNFS 60 GPAQSTAGAI ASVPESLVSA YAGPCFDDYN KSPKDHQDLT DVSKKRKIMA KWTDHVMRVS 120 SENGIEGPHE DGHSWRKYGQ KDILGAKHPR SYYRCTYRNT QSCYATKQVQ RSDEDPTIFE 180 ITYKGKHTCS HGSNSVLPPP SPEQQEQKRN KQNNTSHQQQ SQGIQMSFPT NLRVDTKFLE 240 DRENMASPFS FTSTSFGCMM PDDAFLSSML DDNNTFFDNF NHSLLSPAAG ESNYYLMPPS 300 QMRNIAGNEQ LSECGLTEII SANNSSTNSP IPEMDFPLEP VEIEPNFPFD TTGIFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-20 | 130 | 189 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G117000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419492.1 | 0.0 | probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 1e-57 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A251P753 | 0.0 | A0A251P753_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239051.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 2e-56 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G117000.1.p |