PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G079100.1.p
Common NamePRUPE_ppa007572mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 364aa    MW: 41443.4 Da    PI: 8.8632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G079100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.5e-05121142223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C  Cg++F +++ L +H + H
  Prupe.5G079100.1.p 121 VCRVCGRRFYTNEKLLNHFKIH 142
                         6*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.79E-5120146No hitNo description
PROSITE profilePS5015710.824120147IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
CDDcd061671.25E-9185272No hitNo description
PfamPF019362.9E-6189273IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.8E-4209271IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLKHLKFTQR LETLNPFTLL IRYCHFQSKL CFNSSSPSSC LAPPKIVENS VAILWDLDTK  60
PPKSVSPYEA AVKLKRAASS FGLVRHMIAY ANRHALNYVP QVVRERKERN RVVIRDGELN  120
VCRVCGRRFY TNEKLLNHFK IHEREHAKRL NQIESARGSR RVKLVGKYSM KMEKYKNGAR  180
DVLTPKAGRG LADEVKRAGF WVRSVMDNPQ RVDAALRNHI VDMMDHKRAE CLMLVSDDSD  240
FVDVVMEAKL RCLKTVVVGD FGDGALKRAA DSGFSWNEIL IGKAKKEAVS VVGKWKDRDV  300
LKRLEWTYKP DEEQSVNSWD DEVDGESEDE EIEGIVDGVN DNLGKDVSGR WWELDSDADS  360
SKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G079100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209278.10.0uncharacterized protein LOC18776041
TrEMBLM5W9Q40.0M5W9Q4_PRUPE; Uncharacterized protein
STRINGEMJ104770.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-104C2H2 family protein