PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G096400.1.p | ||||||||
Common Name | PRUPE_ppa026513mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 277aa MW: 29907.2 Da PI: 9.4876 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00022 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Prupe.3G096400.1.p 81 FSCNYCQRKFYSSQALGGHQNAH 103 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.86E-6 | 78 | 108 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
METQKPQMQQ AHDYHQEHPP QAPNTDILLD LSLSNKERDH GSNPELNLIN CFDSNASGNS 60 SPETSSPKGI TAHDAAEPRV FSCNYCQRKF YSSQALGGHQ NAHKRERTLA KKGHKSNCTA 120 ASADAVVRLP SLLSHRFSSM ASLPLHGSFN RSLGVQVHST IHKPCYQLSN TFGSTNTSLY 180 GGHNSNSNGC LRKSLDQQPA IGRLAVPQNN VFHVQGGVGS SSSSSSGGVG RFVNSTSVRK 240 FSPVTEGIGG LWWNSSVGHF KTKQDELQKL DLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G096400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216706.2 | 0.0 | LOW QUALITY PROTEIN: zinc finger protein 1 | ||||
TrEMBL | M5XFR5 | 0.0 | M5XFR5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17905 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 4e-42 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G096400.1.p |
Entrez Gene | 18783491 |