PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G062800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 244aa    MW: 26436.2 Da    PI: 7.2611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G062800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-1869119155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+++Aa+a++ a+++++g
  Prupe.3G062800.1.p  69 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTPDMAARAHDVAALSIKG 119
                         68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-1269119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-3170128IPR001471AP2/ERF domain
PROSITE profilePS5103222.81370127IPR001471AP2/ERF domain
SMARTSM003801.5E-3570133IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2170128IPR016177DNA-binding domain
PRINTSPR003675.4E-107182IPR001471AP2/ERF domain
CDDcd000186.22E-3171129No hitNo description
PRINTSPR003675.4E-1093109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAEPNNSEL AQSSSNSSSS SRLLQTHPTS PSNSLKTKTK THKASSQHQQ QHQVALKRKR  60
DDNSSSKHPV YRGVRMRSWG KWVSEIREPR KKSRIWLGTF STPDMAARAH DVAALSIKGN  120
SAILNFPELA ELLPRPASRK PQDIQAAATK AAAMVHLTST SSSSSSSSSS SSSLLVSQSE  180
GSESEELGEI VELPNIEGSF DSPESRNEFI LVNDSEDGWV YPSMGLEGVE FNLWGFFSSD  240
IGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1965127972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G062800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414467.11e-176ethylene-responsive transcription factor TINY
SwissprotQ9LYD39e-59DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A251PW621e-174A0A251PW62_PRUPE; Uncharacterized protein
STRINGEMJ171871e-130(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]