PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G286000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23079.4 Da PI: 10.2202 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.4e-13 | 39 | 91 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h e+E++RR+++ ++ Lr++lP ++K s ae +Av+YIk+Lq Prupe.2G286000.1.p 39 KKMMHREIEKKRRQEMAALYASLRSVLPLeY---IKGKRSLAEHMNEAVNYIKHLQ 91 6899*************************77...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.07E-12 | 36 | 95 | No hit | No description |
SuperFamily | SSF47459 | 8.57E-16 | 37 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.418 | 38 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 39 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 40 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-4 | 44 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDVGMFNNIN TGGQQRKSSL ALTLDSAENQ DKSNDDGKKK MMHREIEKKR RQEMAALYAS 60 LRSVLPLEYI KGKRSLAEHM NEAVNYIKHL QTRIKVLGRR RDELKIGTSS LPSLSASSST 120 SSTSPRVAVH PCFGGVEIVI SRGGSVEQGL VLSRLLKILL GQGLTVISCA TTQVNGRLVY 180 TIQSEVSDPA WGDFSGLQQI LTESLTRFSN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G286000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007221049.2 | 1e-154 | transcription factor bHLH120 | ||||
Swissprot | Q9FLI0 | 8e-48 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | A0A251QN49 | 1e-152 | A0A251QN49_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234323.1 | 1e-119 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G286000.1.p |
Publications ? help Back to Top | |||
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