PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G039000.1.p | ||||||||
Common Name | PRUPE_ppa007968mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 351aa MW: 38779 Da PI: 10.1507 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.7 | 9.4e-16 | 48 | 131 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ Prupe.2G039000.1.p 48 EWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 131 5*************************************854444555566679****************99997......4699999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-20 | 46 | 131 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDNETNQENP SLPPNNYTST TKELESPRSK PQQPLGVGGS SDRLKRDEWS EGAVSSLLEA 60 YETKWVLRNR AKLKGHDWED VARHVSSRAN CTKSPKTQTQ CKNKIESMKK RYRSESATAD 120 GSSWPLYPRL DLLLRGSGPS PTAASAAATV TAAAIPPPPP PPPLPVQLPP PPPQNNHPLM 180 LLEPSVSLPP QPPPTAPPQP IGTAQNSYGS NGVDHRVAKE DGMGMKLSDH ASDKNPLEID 240 SSTPALYSDK EKLRSKRMKR KIEKKKRRRR EEVEIAESIR WLAEVVVRSE QARMDTMREI 300 ERMRVEAEAK RGEMDLKRTE IIANTQLEIA RLFAAGVGKG VDSSLRIGRS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 263 | 268 | KKKRRR |
2 | 263 | 269 | KKKRRRR |
3 | 264 | 269 | KKRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G039000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB853203 | 1e-165 | AB853203.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH155. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218233.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
TrEMBL | M5X048 | 0.0 | M5X048_PRUPE; Uncharacterized protein | ||||
STRING | EMJ19432 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4994 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-97 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G039000.1.p |
Entrez Gene | 18786399 |