PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G416500.1.p | ||||||||
Common Name | PRUPE_ppa007432mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 369aa MW: 40345.4 Da PI: 7.66 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.8e-07 | 133 | 154 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f++ G+C Gd+C FaHg Prupe.1G416500.1.p 133 AACPEFRK-GHCAKGDSCEFAHG 154 78******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.634 | 81 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-5 | 129 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.009 | 130 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-5 | 133 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 134 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.62 | 164 | 188 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MMLGEPTRLH PTLQVPPWDP FDDLTPTSPF SAPNPSVNVN SNAGNGDYSP LSPMFLDSLA 60 ALHRYLPSNE SDSLGDDPDM PMNPISCDQF RMFEFKVRRC ARGRSHDWTE CPYAHPGEKA 120 RRRDPRKYHY SGAACPEFRK GHCAKGDSCE FAHGVFECWL HPARYRTQPC KDGLGCHRRV 180 CFFAHTPEQL RVLPGQSPRT HGSGAFDSYS YGSSPTSILI SPPISPPSDS PPMSPNSPQL 240 GCNSVSELVA SMRNFKLAKM KMSAPPAWGP QMGSGFGSSP RGSALRPAFC SLPSTPTRTS 300 GRAGPGAVDI WDHPCEEEPA MERVESGRDL RARMYARLSK ENSMGRVGRV DSGMSAPDVG 360 WVSELVSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G416500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007223349.1 | 0.0 | zinc finger CCCH domain-containing protein 23 | ||||
Swissprot | Q9M0G2 | 1e-121 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | M5XSK7 | 0.0 | M5XSK7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ24548 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-119 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G416500.1.p |
Entrez Gene | 18793532 |
Publications ? help Back to Top | |||
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