PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7980V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 478aa    MW: 55190.2 Da    PI: 6.1654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7980V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001129151323
                       ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                       C+   Cgk F ++ +L++H  tH
  Pp3c7_7980V3.1.p 129 CTfeGCGKGFADPGSLRKHAHTH 151
                       88889**************9998 PP
2zf-C2H218.17.5e-06156180123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + C+   Cgk+F ++s LkrH   H
  Pp3c7_7980V3.1.p 156 FICHydGCGKRFVDSSKLKRHFLIH 180
                       78*******************8877 PP
3zf-C2H222.72.6e-07186210123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk Fs   nL++H+rtH
  Pp3c7_7980V3.1.p 186 FVCPfeGCGKAFSLDFNLRSHMRTH 210
                       89**********************9 PP
4zf-C2H218.55.6e-06216240123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + Cp  dCgk++ + + L+ H+r+H
  Pp3c7_7980V3.1.p 216 HACPyeDCGKRYAHEYKLRAHMRNH 240
                       679*********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819952.41E-72177No hitNo description
Gene3DG3DSA:3.30.160.601.0E-13123153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.074127156IPR007087Zinc finger, C2H2
SMARTSM003550.0034127151IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.98E-8129180No hitNo description
PROSITE patternPS000280129151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-14154176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014156180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.775156185IPR007087Zinc finger, C2H2
PROSITE patternPS000280158180IPR007087Zinc finger, C2H2
SuperFamilySSF576674.15E-16167220No hitNo description
Gene3DG3DSA:3.30.160.606.7E-22177209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.3E-4186210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.149186215IPR007087Zinc finger, C2H2
PROSITE patternPS000280188210IPR007087Zinc finger, C2H2
SuperFamilySSF576672.11E-6210243No hitNo description
Gene3DG3DSA:3.30.160.604.9E-13210242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803216246IPR007087Zinc finger, C2H2
SMARTSM003550.0022216240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218241IPR007087Zinc finger, C2H2
SuperFamilySSF576675.23E-5305333No hitNo description
Gene3DG3DSA:3.30.160.601.3E-7307333IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219311341IPR007087Zinc finger, C2H2
SMARTSM003550.039311336IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280313336IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MFHIEQSSLP DHHSDIAMAL AASQQQHHNQ ILQQQQVHLL QQQHILQQQQ IQFLQQQQQL  60
QLQQLQPVYF PPPPRKWVKR WVPQDTVLNQ GKLSILKWVT EDMVAQFTGM AAAMEEQEAE  120
EENEILYLCT FEGCGKGFAD PGSLRKHAHT HGEKQFICHY DGCGKRFVDS SKLKRHFLIH  180
TGEKHFVCPF EGCGKAFSLD FNLRSHMRTH TGENYHACPY EDCGKRYAHE YKLRAHMRNH  240
HDKSIPEMTP PPMHMERDRE RDQELEMSRE RDRDMDRERE REMEKEREIA PVGRPRSGPP  300
RQDVNASDRP FACRYPGCTK RYIHEYKLNL HLRNSHADEN PEFGEEPIGR GDSDGEDDID  360
DGSMQGTPAR AAATARGSGR GKLKIIPKRD PAKQQRRGHL KAQKEVDLNL RVRTLPSETL  420
PTYWRGGQVK HTAPDDSEET EDEDAENTED EGYRYYNGRG EGAMAVDDED TEDDGDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-351292408117PROTEIN (YY1 ZINC FINGER DOMAIN)
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.23242e-77protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379566.10.0zinc finger transcription factor YY1-like
TrEMBLA0A2K1KAX80.0A0A2K1KAX8_PHYPA; Uncharacterized protein
STRINGPP1S42_134V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.15e-79C2H2 family protein