PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_9830V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 23864.4 Da PI: 10.9056 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.1 | 6.9e-11 | 102 | 144 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 + +GV++ k+ +W A I++ +k+++lg+ + eeAa+++++a+ Pp3c6_9830V3.1.p 102 CVMRGVYF--KNMKWQAAIKVE-----KKQVHLGTVSSQEEAARLYDRAA 144 568***99..47*********6.....6********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.794 | 81 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-4 | 102 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-7 | 103 | 147 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-7 | 105 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-4 | 105 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVSIRKRRHG GLSPDKKSQS QAYRNSSYPL PTAIPAGSLN TDKDSSLKQE VTVSRFRFAT 60 LPAIPSFREL HQLYNPVSLP KEREVKKRKR QRRKHQMNQE SCVMRGVYFK NMKWQAAIKV 120 EKKQVHLGTV SSQEEAARLY DRAAYLCGRE PNFELTEAEK QELQLLRWEE FLELTRQSIL 180 SKKRKRGNKN SSGKTTQAAS SPKALIC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 88 | PKEREVKKRK |
2 | 80 | 89 | KEREVKKRKR |
3 | 86 | 91 | KRKRQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024377636.1 | 1e-153 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024377637.1 | 1e-153 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024377638.1 | 1e-153 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024377639.1 | 1e-153 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A2K1KF14 | 1e-152 | A0A2K1KF14_PHYPA; Uncharacterized protein | ||||
STRING | PP1S317_72V6.1 | 1e-152 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8022 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_9830V3.1.p |