PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_5040V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 279aa MW: 30275.8 Da PI: 7.7448

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_5040V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H Pp3c3_5040V3.1.p 71 YSCSFCGREFRTAQALGGHMNVH 93 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.19E-7	68	99	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.3E-5	69	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0023	71	93	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.279	71	98	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.1E-6	71	95	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MATGHIMHQR EVHQQEWPAM ASWAAPGAQV CGGNTWSKRM AMNAPDNESW EVRAFAEDTC 60 CSGAQWPPRS YSCSFCGREF RTAQALGGHM NVHRRERVHA NQLAQLRNAA NASSQSLRGS 120 LSASSKVGCN DAEVAELSWA QCYSKPRSAS SAPLPLSAPS HTADFLTSKS VDAFMPGANR 180 MISGSVVFPS SPSEKSISSS SYERIPDLGT KPLLQSMPDF VREALSHSSG CHPSEKSWWN 240 SGSNVNFEKN PLRLNKVMGE QEDKLDLELR LGQSSCAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	8e-12	66	93	2	29	superman protein
2l1o_A	8e-12	66	93	2	29	Transcriptional regulator SUPERMAN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369924.1	0.0	zinc finger protein 10-like
TrEMBL	A0A2K1KTB2	0.0	A0A2K1KTB2_PHYPA; Uncharacterized protein
STRING	PP1S1_723V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP576	15	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-22	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_5040V3.1.p