PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_32900V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 179aa    MW: 20007.3 Da    PI: 7.1785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_32900V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-057092123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ F++   L  H+++H
  Pp3c2_32900V3.1.p 70 YSCNFCKREFRTAQGLGGHMNVH 92
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.1E-76797No hitNo description
Gene3DG3DSA:3.30.160.603.5E-46896IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.517097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGTRLMSLLF TEQEHLNSLS LWRGNIMHEA DVEGGGEGPY CRPKLPFTTT VPAGFSGGAI  60
TSEQWPPRSY SCNFCKREFR TAQGLGGHMN VHRRERAQAN QLSILTNYNE GLPPIPTNSW  120
EVMKIDWARG YYNQEVPSKH ASSSSPNPSL HGRFHSPDNP EDSIDLELRL GQRSYCIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-126592229superman protein
2l1o_A3e-126592229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358502.11e-132uncharacterized protein LOC112273680
TrEMBLA0A2K1L4251e-131A0A2K1L425_PHYPA; Uncharacterized protein
STRINGPP1S304_51V6.11e-132(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-19C2H2 family protein