PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T083900.1
Common NamePOPTR_0006s09040g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 223aa    MW: 25218 Da    PI: 8.5694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T083900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000145577123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  Potri.T083900.1 55 YSCSFCRREFRSAQALGGHMNVH 77
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-65281No hitNo description
PROSITE profilePS5015711.2195582IPR007087Zinc finger, C2H2
PfamPF139123.1E-55578IPR007087Zinc finger, C2H2
SMARTSM003550.00985577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEQARYWMLT KQKHSLNSHF QASTNPSFDD SWEEQAFAED AAGPLGGCIW PPRSYSCSFC  60
RREFRSAQAL GGHMNVHRRD RARLKQPPSP HNEILQQEHQ SPHSHLQNPY KSFGFQYPSQ  120
LCNLVYSPNP NSDPGPIASP PSSSRVSTTP TQENCRIKGF FPPFSSFIVE EQQKRSPRSS  180
PPPRTKLATE RCYHISDLST EGEQNSRKVE SGCTGKSYCH IY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125077229superman protein
2l1o_A1e-125077229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T083900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090990.0AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459321.11e-161zinc finger protein 10
TrEMBLA0A2K1R7G91e-164A0A2K1R7G9_POPTR; Uncharacterized protein
STRINGPOPTR_0006s09040.11e-160(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.15e-27zinc-finger protein 10