PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G011500.1 | ||||||||
Common Name | POPTR_0019s02540g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 259aa MW: 29679.2 Da PI: 4.5673 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 178.7 | 4.3e-55 | 12 | 239 | 76 | 308 |
GRAS 76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166 +++++++++e+sP++kf+h+taNqaIle+++g++++HiiDfdi++G+QWp+L+ L+ R++ s+++T++ ++++ ++++tg+rL+ Potri.019G011500.1 12 YNMSSFQVLQELSPCVKFAHFTANQAILESTQGDQEIHIIDFDIMEGIQWPPLMVDLTMRKDV--SFKVTAIIG-DQQDVAAVQQTGRRLK 99 567899*****************************************************9655..9*****988.55799*********** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesF 253 ++A+++++ f f+ + l++ ++e++ + g +l+Vn++++ +++++s s+ + ++L v +l Pk+vv+ve+e + s+ Potri.019G011500.1 100 EYADSINLLFVFEQM--MMLNEEDFESI--EMGQTLVVNCMIHQLHMPNRSFSSIK---TFLGGVSRLTPKLVVLVEEElfsfYKFPYMSY 183 *************95..33455555655..4599********99999988888877...********************654334466799 PP GRAS 254 lerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrer 308 +e f+ea+++y++l dsl ++ l++++ e + +E+e+lg +iv+ v++ +++er Potri.019G011500.1 184 VEFFCEAIHHYTTLSDSLvSSFLSANEMELRLIEKEYLGVKIVDSVSQLPCKKKER 239 9*****************89999999999*****************9888887777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 29.076 | 1 | 258 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-52 | 12 | 239 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MLLPRPGYRQ QYNMSSFQVL QELSPCVKFA HFTANQAILE STQGDQEIHI IDFDIMEGIQ 60 WPPLMVDLTM RKDVSFKVTA IIGDQQDVAA VQQTGRRLKE YADSINLLFV FEQMMMLNEE 120 DFESIEMGQT LVVNCMIHQL HMPNRSFSSI KTFLGGVSRL TPKLVVLVEE ELFSFYKFPY 180 MSYVEFFCEA IHHYTTLSDS LVSSFLSANE MELRLIEKEY LGVKIVDSVS QLPCKKKERL 240 LWEEGFASLN DGILGTPE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-30 | 14 | 231 | 96 | 311 | Protein SCARECROW |
5b3h_A | 7e-30 | 14 | 231 | 95 | 310 | Protein SCARECROW |
5b3h_D | 7e-30 | 14 | 231 | 95 | 310 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G011500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024447506.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2K1WMV3 | 0.0 | A0A2K1WMV3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s02540.1 | 1e-179 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13148 | 21 | 30 | Representative plant | OGRP8945 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 9e-37 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G011500.1 |
Entrez Gene | 18108090 |