PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G127700.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 169aa MW: 19210.2 Da PI: 4.8469 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 24 | 48 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w+++l Potri.018G127700.2 24 RWSLIAGRLP-GRTDNEVKNYWNTHL 48 6*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.11E-8 | 23 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-7 | 24 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.29E-7 | 24 | 48 | No hit | No description |
PROSITE profile | PS50090 | 6.69 | 24 | 48 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-13 | 24 | 49 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MPIRRSMLYN NLSGFHFIFI VTCRWSLIAG RLPGRTDNEV KNYWNTHLNK RLPSGKRKST 60 DSNPDQDDNN TKENKSKRLR ALGDSQPTGN TSPIGSTEEL EGKNQEKEER SAVSDVWAQQ 120 DAQSMMNYYI ESPMVPDNNA TFVFDDEPFL AYWDSFVLFE SVGCGGDW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G127700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325206.1 | 1e-104 | transcription factor MYB82 | ||||
TrEMBL | B9IMW0 | 1e-103 | B9IMW0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s12780.1 | 1e-103 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 5e-14 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G127700.2 |