PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G026000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 472aa    MW: 54333.1 Da    PI: 4.514
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G026000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS116.53.5e-362171202374
                GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                         ++Vn+ + lh+ll++++++e+    vL+ vk+l ++++v+veqea++ns+++ er+ ++++yy + f+s ++      ++  ++ +++++r
  Potri.016G026000.1   2 VVVNWNFILHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPDLSERIEQSFQYYCTTFESRQTP-----SQTPVLREMYFRR 83 
                         89*******************....*********************************************999.....7888999999*** PP

                GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak.qaklllrkvk.sdg...yrveeesgslv.lgWkdrpLvsvSaWr 374
                         +i nv+aceg +r+er e++++W++r + aGF pvp + ++ k + ++ l++ + +d    y +ee++g  + l W++ pL ++S+W+
  Potri.016G026000.1  84 QIGNVLACEGVDRVERIESFAQWQNRPSLAGFCPVPQKADEFKeDFQHCLEEEYgEDYleaYGIEEKEGHNIlLSWHGFPLAVASVWK 171
                         ***********************************98876654156666666552443566999999887766**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.1761145IPR005202Transcription factor GRAS
PfamPF035141.2E-332171IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MVVVNWNFIL HKLLAQDGAM EQVLSKVKDL GADIMVIVEQ EANLNSPDLS ERIEQSFQYY  60
CTTFESRQTP SQTPVLREMY FRRQIGNVLA CEGVDRVERI ESFAQWQNRP SLAGFCPVPQ  120
KADEFKEDFQ HCLEEEYGED YLEAYGIEEK EGHNILLSWH GFPLAVASVW KVTDPPQFSG  180
GYWKNLLTGR YTMQDTVDDS EGMASSSESE DDEENESLVC RMADRNLWST QGSSMNRIAA  240
SAKLYDILEY ICHLHRLPLA VTWIFCNRGG NTDSKGKRIL CIDDSARYVN HWQMDAFVDQ  300
YARRRLEKGQ GIAGKALQSN IHIEQHISVL HRDEFLYEDY GPSWCPEAYH AAFAIRLTST  360
HPCMDDCVLE FLLPRFRMKD TSELVLLINE VLRTLQRKCL KMWEVSVREV NEASGSEVRL  420
DDERMPNIPH EDGVLEGNEF MTVNPTSNQA EETREPLEQV LFYTEFMSFF S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G026000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139180.0AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443926.10.0uncharacterized protein LOC7458891
TrEMBLA0A3N7G5D10.0A0A3N7G5D1_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2062225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-34RGA-like 1