PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G134400.1 | ||||||||
Common Name | POPTR_0015s14050g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27845.1 Da PI: 5.9889 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.3e-10 | 75 | 127 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++a +e+Er+RR+++ + + Lr llP+ + +++ s ++ +Av++Ik+L+ Potri.015G134400.1 75 KKVARKEIERQRRQQMSTLHASLRNLLPPdS---IKGRRSISDHMSEAVKCIKHLK 127 68899************************55...********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-10 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.004 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.10E-7 | 74 | 131 | No hit | No description |
Pfam | PF00010 | 2.0E-7 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-8 | 76 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MFPFQQSYDE FWSQISSNPY QEDIDQDQHQ ILGQDSLHGI SNLNNSSVEE VPQAHTILAT 60 SNANDDSGNI RCDEKKVARK EIERQRRQQM STLHASLRNL LPPDSIKGRR SISDHMSEAV 120 KCIKHLKSNI QDLSVKRDKL KNLSSSSTFE HGTEISDHNL LDSVTVRHYL DGLEIVLTRG 180 PGEEGILLSR VLEAVLEEGF DVVGCTSTQK GQRHYTTIQC QASNLNCIDA DRLKGKLIDV 240 ISLSRYE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G134400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321866.1 | 0.0 | transcription factor bHLH118 | ||||
TrEMBL | B9ICZ5 | 0.0 | B9ICZ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s14050.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 | Representative plant | OGRP1638 | 8 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G134400.1 |
Entrez Gene | 7454458 |