PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G100800.2

Common Name

POPTR_0014s09630g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 214aa MW: 24260.3 Da PI: 9.6121

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G100800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.6e-17	10	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l Potri.014G100800.2 10 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55 7999****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.38E-15	1	63	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-25	1	59	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.663	5	59	IPR017930	Myb domain
SMART	SM00717	1.3E-15	9	57	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-15	10	55	IPR001005	SANT/Myb domain
CDD	cd00167	3.04E-13	14	55	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MNYLRPDIKR GNITPDEDDL IIRMHSLLGN RWSLIAGRLP GRTDNEIKNY WNTHLVKRLR 60 SQGITDPGTH RKLAEPGERE VKRRRSNKNT SNKKQNKSKA KLILPAEKHK VHLPKPVRFT 120 SLPLPRNDSF ESNTITISPS QGRDQGSFGT GDSFLVGDND RYGLVNGSDL ECQSPVPTTN 180 TLEKLYEEYL QLLEIDDRQD QVLLDSFADS LLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-14	2	59	51	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G100800.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002320876.1	1e-154	myb-related protein 308
TrEMBL	B9I900	1e-153	B9I900_POPTR; Uncharacterized protein
STRING	POPTR_0014s09630.1	1e-154	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	3e-35	myb domain protein 7

Link Out ? help Back to Top
Phytozome	Potri.014G100800.2
Entrez Gene	7486782