PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G062400.1 | ||||||||
Common Name | POPTR_0001s01840g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 402aa MW: 42410.5 Da PI: 6.5247 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 70.9 | 2e-22 | 304 | 366 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN L++e++++k e+++l +e+ Potri.014G062400.1 304 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENANLRSEVNQIKSEYEQLLAEN 366 89*********************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.8E-27 | 3 | 96 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 6.2E-58 | 135 | 271 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-17 | 297 | 362 | No hit | No description |
Pfam | PF00170 | 1.8E-20 | 304 | 366 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.2E-21 | 304 | 368 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.38 | 306 | 369 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-11 | 307 | 363 | No hit | No description |
CDD | cd14702 | 7.46E-24 | 309 | 359 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 311 | 326 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MVSSDMDKTG KEKEAKPPSA APTQEQPSTA SATTVNPDWS GFQAYSPIPP PGFLASSPQA 60 HPYMWGVQHI MPPYGTPPHP YVAMYPHGVY AHPSIPPGSY PFSPFAMPSP NGIAEASGNT 120 PGSMEADGRP SDAKEKLPIK RSKGSLGSLN MITGKNNEHG KTTGVSANGA YSKSAESGSE 180 GSSEGSDANS QSDSQMKSGG RQDSLEDSSQ NGGSAHGAQN GGQGASNTIM NQTMAIMPIS 240 AASAPGAIPG PTTNLNIGMD YWGAPASSTV PAIRGKVPST PVAGGVVSTG SRDGVQSQIW 300 LQDERELKRQ RRKQSNRESA RRSRLRKQAE CDELAQRAEA LKEENANLRS EVNQIKSEYE 360 QLLAENASLK ERLGEVSGQE DFRAGRNDQH MSNDTQQTGQ T* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 320 | 326 | RRSRLRK |
2 | 320 | 327 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G062400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441628.1 | 0.0 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_024441629.1 | 0.0 | bZIP transcription factor 16-like isoform X1 | ||||
Swissprot | Q501B2 | 1e-171 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | B9MU79 | 0.0 | B9MU79_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s01840.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4017 | 32 | 56 | Representative plant | OGRP700 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 1e-149 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G062400.1 |
Entrez Gene | 7455776 |
Publications ? help Back to Top | |||
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