PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G036900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 362aa MW: 41707.2 Da PI: 8.0702 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.1 | 6.6e-18 | 30 | 114 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 l +++ ++l +p kf +h ++k +tl+ +sg +W+v+l + +++++++ GW++Fvk++ L+e+D ++Fk++g+s f v Potri.014G036900.1 30 L---SAGFDHQLPIPEKFS-NHLKNK-LLENVTLKGPSGSTWQVEL--TTDDNTMFFKHGWEDFVKDHFLEEKDLLIFKYNGESYF--DVL 111 4...4556678*******8.553333.6669***************..999999**************************998888..888 PP EE- CS B3 96 vfr 98 +f+ Potri.014G036900.1 112 IFD 114 876 PP | |||||||
2 | B3 | 49.8 | 6.2e-16 | 262 | 358 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..se 89 f+ v++p +v ++ +v+p ++h +k++++ + ++W+ ++ y k++++ l++GWk+F+ +n+L+e D+++F+ +g+ ++ Potri.014G036900.1 262 FVVVMKPTHVYRKFYMVIPSAWSTRHFRT--LEKKVVILRVKENTWNTNFLYYKSKNSGGLSSGWKSFALDNNLQEFDVCLFEPSGTmnNS 350 7899**********************744..6679*****************99999999***********************88773355 PP E..EEEEE CS B3 90 felvvkvf 97 f l v +f Potri.014G036900.1 351 FVLDVNIF 358 55555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-21 | 21 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.002 | 23 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-22 | 24 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.74E-20 | 25 | 114 | No hit | No description |
SMART | SM01019 | 1.7E-14 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-15 | 31 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-20 | 256 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-18 | 261 | 350 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.16E-21 | 262 | 359 | No hit | No description |
Pfam | PF02362 | 7.0E-15 | 262 | 358 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.125 | 262 | 361 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-12 | 262 | 361 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGEETCEDCR GWEEELYWTH FQCTHFFQIL SAGFDHQLPI PEKFSNHLKN KLLENVTLKG 60 PSGSTWQVEL TTDDNTMFFK HGWEDFVKDH FLEEKDLLIF KYNGESYFDV LIFDGQSFCE 120 KAASYFVRKC GHREGDSFVQ TKRKAVEDSV EVTNACPHNG LGGTPEKSAD GYIYKTPVRN 180 SVVSKAINKK TRREVKFSKP IQTRKRVRYE GPSSTAEEIE TKPDVQHIPI GTTYVSSRRM 240 VTEQDKLNAL RLAQTAQTNE GFVVVMKPTH VYRKFYMVIP SAWSTRHFRT LEKKVVILRV 300 KENTWNTNFL YYKSKNSGGL SSGWKSFALD NNLQEFDVCL FEPSGTMNNS FVLDVNIFRV 360 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-14 | 236 | 360 | 22 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-14 | 236 | 360 | 22 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G036900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441262.1 | 0.0 | B3 domain-containing protein REM16 isoform X2 | ||||
TrEMBL | A0A2K1XQ19 | 0.0 | A0A2K1XQ19_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_010400m | 1e-167 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 | Representative plant | OGRP6299 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-84 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G036900.1 |