PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G017100.1
Common NamePOPTR_0014s01730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 344aa    MW: 38073.4 Da    PI: 4.7778
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G017100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-102863261055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ ++P+      +K++ +++Le+Av+Y+k Lq
  Potri.014G017100.1 286 RKRRERINERLKILQHIVPNG-----TKVDISTMLEEAVHYVKFLQ 326
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.704276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-13277336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-11281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-11285330No hitNo description
PfamPF000108.2E-8286326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQTMGDFPDG EWDFSRMFSM EDPDFTPELL GQCSFPQEND EGLQFTIPPA AFFPTPEANV  60
SMAGNESLFY SWNALNPNLH FDSQESGNNS NCSSGVFLPS SSHESYFFND SNRIQAANDN  120
SMSMDISLMD EKTIGLFMPF FPEIAMAETA CMNGDMSSDK IGDLDDNLQP AANTVLAKGL  180
QLKRKLDVPE SNTLDDMKKK PRITRNVQKS KKSVQSKKNQ RSTPKISNEE EESNAGPDGQ  240
SSSSCSSEDD NASKDSDSKV SEVLSSSGKT RASRGAATDP QSLYARKRRE RINERLKILQ  300
HIVPNGTKVD ISTMLEEAVH YVKFLQLQIK VKALVNFFLH AAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G017100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320693.20.0transcription factor bHLH85
TrEMBLA0A2K1XNY80.0A0A2K1XNY8_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-37ROOT HAIR DEFECTIVE 6-LIKE 2