PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G132100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 323aa    MW: 36332.2 Da    PI: 8.2903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G132100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10153204154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ a +e+Er+RR++i +  + Lr llP  +    ++K s ++   +A +YIk+L
  Potri.012G132100.1 153 KKIARKEIERQRRQHISTLHASLRNLLPLeS---IKGKRSISDHMNEAAKYIKHL 204
                         577899***********************66...********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-8150209No hitNo description
SuperFamilySSF474593.93E-11151218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.709152204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-9154220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0053158210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTAPQNVNAM CGCHRFSTKV KAPHIPSFNL ATFSQHLDWK SCYISYTNDH EPVLATTVSI  60
SLSLLIIAAR YIQLKSLCSM FPFQQNSDEF WPQIFSNPYQ EDIGKDFQDL IYGQDSLHGI  120
SNQTISVDEI QKHKILATSK ANDHSGKIIR DEKKIARKEI ERQRRQHIST LHASLRNLLP  180
LESIKGKRSI SDHMNEAAKY IKHLSSNIRE LSAKRDKFKK LSNSSTFEQG TEISGHNLLD  240
FVKVRPYLGG VEIVVSGGCG EEGFLLSRVL EALLEEGFDA VSYVSTQKDE RHYTTIQCQA  300
TNRNCIDSDG LQRKLNGVIS LS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G132100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318855.11e-179transcription factor bHLH120
TrEMBLA0A3N7FW131e-178A0A3N7FW13_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14070.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-33bHLH family protein