PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G033000.1
Common NamePOPTR_0011s03560g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 484aa    MW: 53137.3 Da    PI: 6.1752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G033000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.4e-053583951254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Potri.011G033000.1 358 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 395
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-11356411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-5356398No hitNo description
Gene3DG3DSA:4.10.280.102.8E-8360402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MAEEFQAGIC GENWWMNSSK SMFIGGLSPC STVSLPSDHM GTYNGSWATA DMVDLKPRSI  60
SCKESHNTTS VSDTSIAFLN SPKPQQANSD SGGSSNLIDS TLQMMGFGLS SSSSSSDWNQ  120
ALLSGNGRTE SYNSMLQEDM NSGGLNSSQI RKDWSPKSYA RTAEDFSLDQ QRLNPVNSSS  180
NSPPTCQGFS TGFSMEPTAS YCYPSTLIQS LFEPDHLQPQ QVQSLFNNRP MNYLSPTAPN  240
YGTNMSELSS PSWTKVSPLI KSCLQKQQAS SLHFTNNTTY WNASPTGIND IRASFLPSSP  300
SQFLLPTFQE KPNCPSLTIQ PNREEVRDSV SVVKKGCEPA FKRPRIEAPS PLPTFKVRKE  360
KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQAT VLSTPYMKNG NPIQHQQAPE  420
DKLNDLEGPK QDLRSRGLCL VPISSTFPVA NETTADFWTP TFGGTFSFVS NQPRWKETLI  480
TSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.94430.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G033000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472300.0EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437494.10.0transcription factor bHLH112 isoform X1
TrEMBLA0A2K1YF140.0A0A2K1YF14_POPTR; Uncharacterized protein
STRINGPOPTR_0011s03560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-66bHLH family protein
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]