PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G118700.1
Common NamePOPTR_0010s12860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 267aa    MW: 30201.1 Da    PI: 8.2758
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G118700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.2e-13174199126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ +++tG C yG+ C+FaHg
  Potri.010G118700.1 174 FKTELCNKWQETGACLYGNHCQFAHG 199
                         79***********************8 PP
2zf-CCCH26.41.2e-08212236125
                         --S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                         ykte C+  +++G+C+yG rC+F H
  Potri.010G118700.1 212 YKTEVCKMVLAGGICPYGHRCHFRH 236
                         9**********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.7E-18168206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-11170205IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793173201IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9174199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-9207242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-12207240IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5211238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328211239IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-6212236IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRHQDLINRS ALCLARLREV TVEMECLRQD NADLRSINRE LNNQLSVLIQ ASLHKHYNDS  60
TRTPFDIDIG FHNLCNISSG GGGGHDMCEE DESPTSVMEA GGDDRERISL PKSISVRSNS  120
YSKRNQEQAA SASVTRAITR LRTPSPLNTA KVYVRRGKKQ EEPLELEVYN QGMFKTELCN  180
KWQETGACLY GNHCQFAHGI EELRPVIRHP RYKTEVCKMV LAGGICPYGH RCHFRHALTE  240
QDRFLSHIKP GKSSLTDENR IPRIAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21174240470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G118700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465881.10.0zinc finger CCCH domain-containing protein 15, partial
SwissprotQ9C9F54e-77C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLB9HWC00.0B9HWC0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.24e-81C3H family protein