PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G130600.1 | ||||||||
Common Name | POPTR_0009s13310g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 342aa MW: 38097.7 Da PI: 7.9344 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.5e-09 | 80 | 105 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C f GtC+ G++C+FaHg+ Potri.009G130600.1 80 FKTRVCAKFKT-GTCRNGENCNFAHGM 105 69*******99.*************95 PP | |||||||
2 | zf-CCCH | 29.6 | 1.1e-09 | 144 | 167 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H Potri.009G130600.1 144 KMKLCKKFYNGEECPYGDRCNFLH 167 789*******66************ PP | |||||||
3 | zf-CCCH | 41.4 | 2.3e-13 | 229 | 254 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC + tG+C++G++C+FaHg Potri.009G130600.1 229 WKTKLCTKWEITGQCPFGEKCHFAHG 254 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 76 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-8 | 77 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.253 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-7 | 80 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-9 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-7 | 144 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-16 | 224 | 260 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-10 | 227 | 259 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 228 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.544 | 228 | 256 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-11 | 229 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MSYPDSHDSF MSPQASYQAG SDAIGVWPQF VMNNIEQFEH HQPPYKRPRN SEDNPNQSVN 60 SRTPPTNNLP VHKGATNIFF KTRVCAKFKT GTCRNGENCN FAHGMQDLRQ PPPNWKELVG 120 VSVSSEEDRS TATNWEDDQR IIHKMKLCKK FYNGEECPYG DRCNFLHEDP SKFREDTGRF 180 RESSAISIGT TGQALGHGSG VFNAAEVNRP ANNAVSDASR SNIIKPVYWK TKLCTKWEIT 240 GQCPFGEKCH FAHGLAELQA PGGRTEVEAG NAGSVLTKAP PPLLPNNVSP SMIVNVPSLI 300 EEEQGKKCLL KWKGQKKINR IYADWLDDLP LVHNLTNQVQ S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G130600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313732.2 | 0.0 | zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 7e-99 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A2K1Z781 | 0.0 | A0A2K1Z781_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s13310.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 | Representative plant | OGRP2045 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-92 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G130600.1 |
Entrez Gene | 7472142 |