PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G108800.1
Common NamePOPTR_0008s10810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 743aa    MW: 84679.1 Da    PI: 6.047
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G108800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.4e-2059152190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r++tr+gC+a +++ k+      +w+vt +++ HnH
  Potri.008G108800.1  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKLSEDGKMQRNRKSTRCGCQAFMRIVKRAdfdVPEWRVTGFSNIHNH 149
                         6***************9998874556679*******************9*******************98887676789************ PP

                FAR1  88 ela 90 
                         e++
  Potri.008G108800.1 150 EMF 152
                         *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1759152IPR004330FAR1 DNA binding domain
PfamPF105511.5E-23275366IPR018289MULE transposase domain
PROSITE profilePS509669.557533581IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-5556583IPR006564Zinc finger, PMZ-type
PfamPF044348.4E-8556579IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MSEGTNMVMG SSEDGTDISQ DDKGTTEETP EDAILLRQTS VNLVPFIGQR FASQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSTRCG  120
CQAFMRIVKR ADFDVPEWRV TGFSNIHNHE MFKLNEAHLL PASCTMSPDD KSRICIFAKA  180
GMSVRQMLRL MELEKGVKLG CLPYTEIDVR NLLLSFRNVN QDNDAIDLIA MCKKLKDEDH  240
NFKYDFKIDC NNRLEHIAWS YASSVRLYEA FGDAVVFDTT HHLDAYDMWL GIWVGVDNHG  300
MTCFFSCVLL REENMESFSW ALKAFVNFMN GKAPQTIITD QNMWLKEAIA IEMPDTKHAF  360
CIWHIISKFS DWFSILLGSC YDDWKAEFLR LYNLESVQDF EEGWSEMVEK YELHANKHIT  420
SLYAFRSFWA LSFLRNYFFG GTMDVCQSGS ITAFIQRFLS AQSRLDYFVD ELADIVDFKP  480
ELPQKLHKVY LKTGSPIESH AASVLTPYAF GKFQEELVLA PQYASFPVDE YCFQVRHHTQ  540
ISGGCKVIWD SCQGNISCSC SWFEYSGILC RHVLRVLSTN NCFQIPDNYL PTRWQCVSSS  600
STSRMHSEKI QLLESMASTL MAESVETEER LDVACEQISM VLSHIRDLPT QTHGESAYNC  660
PPDSLILPEV EDSGGIGNFT IENPDDAITL AKLKDRQPRV GVDISRKRRH HSGPCCGHFG  720
HDATDCPMTR SDQMNGTTLG YL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G108800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463358.10.0protein FAR1-RELATED SEQUENCE 11 isoform X3
RefseqXP_024463359.10.0protein FAR1-RELATED SEQUENCE 11 isoform X3
RefseqXP_024463360.10.0protein FAR1-RELATED SEQUENCE 11 isoform X3
RefseqXP_024463361.10.0protein FAR1-RELATED SEQUENCE 11 isoform X3
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A3N7FDY00.0A0A3N7FDY0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]