PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G129500.1 | ||||||||
Common Name | POPTR_0007s01870g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 274aa MW: 31258.2 Da PI: 5.9087 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 91.6 | 1e-28 | 109 | 196 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Potri.007G129500.1 109 FYNAYATRIGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHTHTLTP 196 ******************************************9988..9**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-25 | 109 | 196 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MSSLIRRRVG MEVIETIDVV FTVDFIVDGD ANGDVPGNAV VDIARAGDEN EIFENSAEEE 60 FEQYEDRKMD KETLDIDTIT DGAPAMSMIT ADEPYLGQEF DSEAAAHAFY NAYATRIGFV 120 IRVSKLSRSR RDGSAIGRAL VCNKEGFRMP DKREKIVRQR AETRVGCRAM ILVRKISSGK 180 WVVTKFVKEH THTLTPGKGR RDCIYEQYPN EHDKIRELSQ QLAIEKKRSA TYKRHLELIF 240 EHIEEHNESL SKKIQHTVDS VRDMENKEQQ SQT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G129500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 0.0 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309799.3 | 0.0 | protein FAR1-RELATED SEQUENCE 12 isoform X1 | ||||
TrEMBL | A0A2K1ZTL4 | 0.0 | A0A2K1ZTL4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01870.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 | Representative plant | OGRP10299 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 6e-89 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G129500.1 |
Entrez Gene | 7469585 |