PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G093400.1

Common Name

POPTR_0007s05410g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CAMTA

Protein Properties

Length: 1092aa MW: 122445 Da PI: 5.547

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G093400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	179.2	5e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 l+ ++rwl++ ei++iL+n+++++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+e+n+ Potri.007G093400.1 20 LEAQHRWLRPAEICEILTNYQRFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSVDVLHCYYAHGEDNE 110 5679************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrr+ywlLeeel++ivlvhy+evk Potri.007G093400.1 111 NFQRRSYWLLEEELSHIVLVHYREVK 136 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.948	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.2E-77	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.6E-49	21	134	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.1E-4	511	599	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.03E-15	513	598	IPR014756	Immunoglobulin E-set
Pfam	PF01833	2.1E-5	513	596	IPR002909	IPT domain
SuperFamily	SSF48403	4.66E-15	688	804	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.3E-16	688	805	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.72E-11	699	802	No hit	No description
PROSITE profile	PS50297	16.547	710	814	IPR020683	Ankyrin repeat-containing domain
Pfam	PF00023	5.4E-4	743	774	IPR002110	Ankyrin repeat
SMART	SM00248	0.011	743	772	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.778	743	775	IPR002110	Ankyrin repeat
SMART	SM00248	3300	782	811	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	5.84E-8	913	967	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	2	916	938	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0045	919	937	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.206	919	946	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0039	939	961	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.597	940	964	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.2E-4	942	961	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence Send to blast
MADTKRYPLG NQLDIQQILL EAQHRWLRPA EICEILTNYQ RFRIAPEPAH MPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEDNE NFQRRSYWLL 120 EEELSHIVLV HYREVKQGTR TNFNRIKEHE ECIPYSQETE DTMPSSEMDT SVSSRFHPNG 180 YQVPTRTTDT TSMNSAQASE YEDAESVYNN QASSTFHSFL EVQKPAMERI DTGSSVHYDH 240 MTFSSDYQGK LSAVPGMDVI SLAQVDKTKE TNGTESACEP QKVIDLPSWE DVLENYARGT 300 ESVPFQTLLS QDDTVGIIPK QEDGILEKLL TNSFDKREDI GSHILDQEAW QSMEGVSSHL 360 LKWSVDQKLL LNSGYDLTAR FPDQQLDSGN LINTLEPLCT QENDLHIQND IQIQPANADH 420 GMTLEGKSMY SSSVKHHILD GSGTEGLKKL DSFTRWMSKE LGDVEPQVQS SSGSYWITAE 480 SENGVDDSSN PSQGNLDAYL LSPSLSQDQL FSIIDFSPNW AYAGTEIKVL IMGRFLKGRE 540 AAENCQWSIM FGEVEVPAEV IADGVLRCNT PSHKAGRIPF YVTCSNRVAC SEVREFEYLS 600 HTQDITYYYS DSVTEDLNMR FGKLLSLSSV SPSKYDSSSV DEILSSKINS LLNEDNETWD 660 QMFKLTSEEG FSSEKVKEQL VQKLLKEQLH VWLLQKASEG GKGPSVLDEG GQGVLHFAAA 720 LGYDWALEPT IVAGVSVNFR DVNGWTALHW AASYGRERTV ASLIHLGAAP GALTDPTPKY 780 PTSRTPADLA SANGHKGISG FLAESALSAH LSSLNLEKQD GKAAECSGTQ ASQTVSGCNA 840 TPVNDADLPS RLPLKDSLAA VCNATQAAAR IHQVFRVQSF QKKQLKEYGD DKLGMSHERA 900 LSLIAVKSQK AGQYDEPVHA AIRIQNKFRG WKGRKEFLII RQRIVKIQAH VRGHQVRKNY 960 RKIIWSVGIL DKIILRWRRK GSGLRGFKSE ALTDGSSMQV VQSKDDDDDF LKEGRRQTEE 1020 RSQIALARVK SMHQHPEARE QYCRLRNVVA EIQEAKAMGE WANNSEVMAE FDDLVDLGTL 1080 MDDDSFMPSN S*

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence Send to blast

MADTKRYPLG NQLDIQQILL EAQHRWLRPA EICEILTNYQ RFRIAPEPAH MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEDNE NFQRRSYWLL  120
EEELSHIVLV HYREVKQGTR TNFNRIKEHE ECIPYSQETE DTMPSSEMDT SVSSRFHPNG  180
YQVPTRTTDT TSMNSAQASE YEDAESVYNN QASSTFHSFL EVQKPAMERI DTGSSVHYDH  240
MTFSSDYQGK LSAVPGMDVI SLAQVDKTKE TNGTESACEP QKVIDLPSWE DVLENYARGT  300
ESVPFQTLLS QDDTVGIIPK QEDGILEKLL TNSFDKREDI GSHILDQEAW QSMEGVSSHL  360
LKWSVDQKLL LNSGYDLTAR FPDQQLDSGN LINTLEPLCT QENDLHIQND IQIQPANADH  420
GMTLEGKSMY SSSVKHHILD GSGTEGLKKL DSFTRWMSKE LGDVEPQVQS SSGSYWITAE  480
SENGVDDSSN PSQGNLDAYL LSPSLSQDQL FSIIDFSPNW AYAGTEIKVL IMGRFLKGRE  540
AAENCQWSIM FGEVEVPAEV IADGVLRCNT PSHKAGRIPF YVTCSNRVAC SEVREFEYLS  600
HTQDITYYYS DSVTEDLNMR FGKLLSLSSV SPSKYDSSSV DEILSSKINS LLNEDNETWD  660
QMFKLTSEEG FSSEKVKEQL VQKLLKEQLH VWLLQKASEG GKGPSVLDEG GQGVLHFAAA  720
LGYDWALEPT IVAGVSVNFR DVNGWTALHW AASYGRERTV ASLIHLGAAP GALTDPTPKY  780
PTSRTPADLA SANGHKGISG FLAESALSAH LSSLNLEKQD GKAAECSGTQ ASQTVSGCNA  840
TPVNDADLPS RLPLKDSLAA VCNATQAAAR IHQVFRVQSF QKKQLKEYGD DKLGMSHERA  900
LSLIAVKSQK AGQYDEPVHA AIRIQNKFRG WKGRKEFLII RQRIVKIQAH VRGHQVRKNY  960
RKIIWSVGIL DKIILRWRRK GSGLRGFKSE ALTDGSSMQV VQSKDDDDDF LKEGRRQTEE  1020
RSQIALARVK SMHQHPEARE QYCRLRNVVA EIQEAKAMGE WANNSEVMAE FDDLVDLGTL  1080
MDDDSFMPSN S*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G093400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024461051.1	0.0	calmodulin-binding transcription activator 3 isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	B9HFG2	0.0	B9HFG2_POPTR; Uncharacterized protein
STRING	POPTR_0007s05410.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8284	27	35
Representative plant	OGRP562	15	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Potri.007G093400.1
Entrez Gene	7456909

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]