PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G221500.2 | ||||||||
Common Name | POPTR_0006s23810g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 27512.3 Da PI: 5.1916 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 41 | 85 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Potri.006G221500.2 41 RGNISPDEEDLIIRLHKLLGNR-WALIAGRIP-GRTDNEIKNYWNST 85 7899******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-19 | 21 | 93 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-11 | 21 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.077 | 22 | 35 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 25.402 | 36 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-16 | 40 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 41 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.45E-12 | 45 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 48 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MLEIMVKGTG LGFQRKQASL KRCGKSCRLR WLNYLKPDVK RGNISPDEED LIIRLHKLLG 60 NRWALIAGRI PGRTDNEIKN YWNSTLKRKV QANDQKQPRR GNKDTKKQTR KTSTGLNKAA 120 PCTNSSLPSP PVLAENIETD QILTASSIEE GTLEKYLIEN PNSNDELLLF TNDNDVPCNF 180 LMDLDMGQMS FSDFLQTDIF SDSNNMLVNG PAPSYPDEAS LFPEAMLQNW ICEDGFELEL 240 AMGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-23 | 22 | 90 | 40 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G221500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ588548 | 0.0 | FJ588548.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB183) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309470.2 | 1e-167 | transcription factor WER | ||||
Swissprot | Q9FJA2 | 1e-39 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | B9HD14 | 1e-165 | B9HD14_POPTR; MYB family protein | ||||
STRING | POPTR_0006s23810.1 | 1e-166 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 6e-42 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G221500.2 |
Entrez Gene | 7491993 |