PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G104200.1 | ||||||||
Common Name | POPTR_0006s10510g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 437aa MW: 48848.5 Da PI: 5.6907 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5e-18 | 67 | 125 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p++ + k+ r +lg+f ta eAa a++ a+k ++g Potri.006G104200.1 67 CRYRGVRQRT-WGKWVAEIREPVKKCslmnKQgSRLWLGTFSTAIEAACAYDYAAKLMYG 125 78*****999.**********777555654346***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.0E-11 | 67 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.29E-28 | 67 | 134 | No hit | No description |
SuperFamily | SSF54171 | 4.32E-19 | 68 | 134 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.247 | 68 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-28 | 68 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-32 | 68 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MEDSLRQSSL LGFSSKDRKR RRNGCESIED TLARWKKHNK LQVSKVPGKG SKKGCMKGKG 60 GPENMNCRYR GVRQRTWGKW VAEIREPVKK CSLMNKQGSR LWLGTFSTAI EAACAYDYAA 120 KLMYGPNAIL NFPDYPVQSG NHLDNMSSSI TATETSSTES RTALDSYEDN KVDKLKINHC 180 GSREGNNQSG FSRICAVDES EEEVEKIRVA ESSAMELKAV EWNLTDDWKS SHHIEAEAPV 240 LREEIDGECA GILRSWGCYE HKKLKNEVVE SSMSTRLNEC VDSDYDMRTD HKPIYDVEKP 300 LMREAAAGEE FSGLKFSNYN PFETTHDHMN PGLCNQEIDI KPFIQDISDN SVLKGGGNYG 360 YDPAKVGSAS HLQSRRPSGL SCQLQTPSTN LPGSLSYFQE ADIGLGWNFD LSQQDFNGGL 420 VGEPGLLDQW YPELQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 69 | 133 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 21 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G104200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155960 | 0.0 | EF155960.1 Populus trichocarpa putative DRE-binding protein 4 (DREB4) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459148.1 | 0.0 | uncharacterized protein LOC7468071 isoform X1 | ||||
TrEMBL | A0A2K2A017 | 0.0 | A0A2K2A017_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s10510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17110 | 5 | 8 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 8e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G104200.1 |
Entrez Gene | 7468071 |