PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.006G080300.1 | ||||||||
Common Name | POPTR_0006s08000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19414 Da PI: 8.4583 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.6e-18 | 22 | 71 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p+ + +r++lg+++ +e+Aa+a++aa +++ge Potri.006G080300.1 22 YRGVRMRT-WGKWVSEIRVPK----TgQRIWLGSYDAPEKAARAYDAAQYCIRGE 71 9****998.**********95....35*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.79E-20 | 21 | 79 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-28 | 21 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.259 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-31 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-9 | 22 | 33 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-11 | 22 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.13E-28 | 22 | 79 | No hit | No description |
PRINTS | PR00367 | 3.6E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence Send to blast |
MDPCKSSAPP KKVRQGRNSG TYRGVRMRTW GKWVSEIRVP KTGQRIWLGS YDAPEKAARA 60 YDAAQYCIRG ERGQFNFPAE RRPQLPSGPV DALSKKEIKA IAFNFASSNA SSVSPSVITP 120 VEMVEPSLPN LQVSSATGNA GNVEGYVPAS ASVPDLCSID NLQLDDLLML DIEWIDSL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 16 | 80 | 9 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00463 | DAP | Transfer from AT4G31060 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.006G080300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458701.1 | 1e-124 | ethylene-responsive transcription factor ERF015 | ||||
Swissprot | Q6NLD5 | 2e-56 | ERF15_ARATH; Ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | B9HBC8 | 1e-128 | B9HBC8_POPTR; ERF family protein | ||||
STRING | POPTR_0006s08000.1 | 1e-128 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15479 | 10 | 11 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31060.1 | 7e-45 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.006G080300.1 |
Entrez Gene | 7487234 |
Publications ? help Back to Top | |||
---|---|---|---|
|