PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G234500.1 | ||||||||
Common Name | POPTR_0005s25590g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | DBB | ||||||||
Protein Properties | Length: 312aa MW: 34288.4 Da PI: 6.6581 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.7 | 9.9e-08 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++ fC+ ++ lC++C H+ H+ Potri.005G234500.1 4 QCDVCSKEEASVFCTADEAALCDTCDHRVHHAnklaskHQ 43 7***************************964446666676 PP | |||||||
2 | zf-B_box | 24.5 | 5.5e-08 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ +++k++ lfC++++ lC+dC +H Ht Potri.005G234500.1 56 PICDICQDKRAFLFCQQDRAILCRDCDGPIHTAneHT 92 79*************************9999546665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.192 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.81E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 9.6E-6 | 4 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.84 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.79E-9 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 8.3E-7 | 56 | 92 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MKIQCDVCSK EEASVFCTAD EAALCDTCDH RVHHANKLAS KHQRFSLLHP SSKNFPICDI 60 CQDKRAFLFC QQDRAILCRD CDGPIHTANE HTQKHNRFLL TGVKLSATSA VYMSSSSSVT 120 SSGDLVPDSK SQKQQQQQLI KKPVSVAPVN SNPPAVPSTL SANTVINKDG DNLVTSEGFG 180 STTSSTISEY LMETLPGWHV EEFLDSSSTT PFGFSKIDDG LLPYMDTHDL ERNMSSFSSE 240 SLGLWVPQAP TPPLCTSQQY YYPQLVGQSG FKETKESTNM KANRRLTDDA FTVPQISPPS 300 NIGSKRSRPL W* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G234500.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208480 | 1e-157 | AC208480.1 Populus trichocarpa clone JGIACSB1081-D20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383728.1 | 0.0 | B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 3e-93 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | U5GDM1 | 0.0 | U5GDM1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s25590.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 | Representative plant | OGRP2984 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-57 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G234500.1 |
Entrez Gene | 7477648 |