PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G061100.1
Common NamePOPTR_0005s06240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 859aa    MW: 95326.6 Da    PI: 7.73
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G061100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06164183525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         lC++f + G C++G+ C+F H
  Potri.005G061100.1 164 LCKDFVA-GRCRRGSHCQFLH 183
                         9******.************* PP
2zf-CCCH18.24.5e-06224242625
                         -SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                         C +f++ G C++G++C++aH
  Potri.005G061100.1 224 CTNFLK-GNCRRGESCRYAH 242
                         ******.************* PP
3zf-CCCH17.76.3e-06287307526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ffa+ G C+ G  C+F+H 
  Potri.005G061100.1 287 PCKFFAA-GNCQNGKYCRFSHH 307
                         7**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.408159186IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4159185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5161184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-6163187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873218245IPR000571Zinc finger, CCCH-type
SMARTSM003560.01218244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197282309IPR000571Zinc finger, CCCH-type
SMARTSM003560.03284308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5286307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MSGSGRKRSS KWDLKEGSQM SFEDVEDNAW PGKAGIPFRD KESRCDWLPP EAAGGTRSKW  60
LAMEPLPGRR GSRRVDNIDE DHSRTLKATY EDESYGTRMS PGLDEWRQQS FRNSPKNEYK  120
RLRRSLSQSR SRSQSRSRSP VYGFGRESGA YDRTRSRSGV SAQLCKDFVA GRCRRGSHCQ  180
FLHQDTETYE DDWERPRKTA ASKYPISHDT KQYPMGSGRS ANCCTNFLKG NCRRGESCRY  240
AHHGASDPSS RGSANEVIRE RDNDRRRRYA SPERRAERET SRAADIPCKF FAAGNCQNGK  300
YCRFSHHDQT LASPDKRSRD VRWPPSQNSD ELEKSWKGPK WSDSHTSDSA KFSEDKNEKL  360
DAPNLRLSAR HMEDGWGHNP DEDKTASNPP TNEVVEIDKK EAFQWKTENS GDNTNVSENW  420
LGDMEMSPDW NYRLQPSNHI NEGSCHELQE GSGRMHDTAA VMPPISNETS SIQQGFNLKE  480
VGGSALPHDD DGVTAKTASS YINISANALA SQSFNKNGQS SNTSPILNLN TVGQIQEAIL  540
TNASRGGTTT NPQNQTLFQE RAVINIPDTG NPNAPHANLG IPTAQNMASN EHLTQLTNLS  600
TTLVQLLVNG QQLPQLYEAH NSHDGTFANS EGTVTVKPDS AVTIQPNQAV EPRKQYDPIC  660
DSVEPGKLNV NTNPPDKKLE LLSKSLSPSS LAAAPNGGDF NKFFLEQESN EKSSQLNQPA  720
PAASSEATNE NNGVGSGEGN KVQEQDKTAQ ENGPLENSDG DGKADESRKN KDAKGNRAFK  780
FALVEFVKDL LKPAWKEGQI SKDAYKNIVK KVVDKVTGTM HSASIPTTQE KIEQYLSVSK  840
PKLTKLVQAY VEKFQKDK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258267RERDNDRRRR
2263268DRRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G061100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134930.0AC213493.1 Populus trichocarpa clone POP014-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307020.30.0zinc finger CCCH domain-containing protein 38
TrEMBLA0A3N7F0G10.0A0A3N7F0G1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Representative plantOGRP1027869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-18C3H family protein