PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G220400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 149aa    MW: 17108.6 Da    PI: 6.7872
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G220400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.5e-1336116383
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                         ++++++d  ++g l++p   +     ++ +s+ + + d +g +W + +++ r+ s +++l+ GW++Fv++ +L++ D v+++
  Potri.004G220400.1  36 SKFLTADDIENG-LSIPGCSLGPLPFQEGQSMNMHVHDGNGHEWIFSCTIkRNESMGHFLSVGWNKFVRERDLRVDDKVTIH 116
                         566688888888.99999888777888999******************885666666***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-1233119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-1034118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.83E-935116No hitNo description
PfamPF023625.0E-1136116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
KNISDSIYLA IDTYHYRSTQ VFFFCFLKQA MALVFSKFLT ADDIENGLSI PGCSLGPLPF  60
QEGQSMNMHV HDGNGHEWIF SCTIKRNESM GHFLSVGWNK FVRERDLRVD DKVTIHEEAM  120
KNQAMGTWIK VEVKRKIRLF GEDVWADV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G220400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.17e-65PREDICTED: uncharacterized protein LOC105109425
TrEMBLU7DUM12e-83U7DUM1_POPTR; Uncharacterized protein
STRINGPOPTR_0601s00200.14e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-06ethylene response DNA binding factor 3