PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G168100.1
Common NamePOPTR_0004s17540g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 327aa    MW: 36155.3 Da    PI: 6.2477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G168100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.8e-094491354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +++ +k+L
  Potri.004G168100.1 44 IQKADREKLRRDRLNEHFVELGNTLDPD----RPKNDKATILADTIQLLKDL 91
                        56789********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.834191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-1441110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1142113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-64295No hitNo description
PfamPF000106.9E-74491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-74797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDPFTDFNPP PPPPVPRHVP PTRPNPNPKS SEAEIKDSVS ARKIQKADRE KLRRDRLNEH  60
FVELGNTLDP DRPKNDKATI LADTIQLLKD LTSQVDKLKA EYATLSEESL ELTQEKNDLR  120
EEKASLKSDI ENLNIQCQQR LRAPYPWPAM DHSFMMAPPS YPFPMPVPMP PGAIPLHSSI  180
QPYPFFGNQN PAVIHNPCST FVPCMAPNTL VDQQSAQHVS SLSQPASRSH VSGEQDLKNK  240
PSGECKIEKS EGSNDVTTDL ELKTPGSTAD QDLSSGQRKS KKSQRKESSV TERSSSSRCS  300
SSHSVQDSSS NSVVDSTKHD DLDKLE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G168100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2309101e-107CU230910.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384545.10.0transcription factor bHLH121
RefseqXP_024454652.10.0transcription factor bHLH121
RefseqXP_024454653.10.0transcription factor bHLH121
SwissprotQ9LT234e-93BH121_ARATH; Transcription factor bHLH121
TrEMBLB9H1510.0B9H151_POPTR; Uncharacterized protein
STRINGPOPTR_0004s17540.30.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-83bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]