PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G204700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 455aa MW: 51187 Da PI: 6.5627 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.3 | 2.7e-20 | 123 | 219 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt++ v++Li ++ ++++ + +kk++W+ vsk m +g+++sp+qC++k+++lnkryk+++e+ +++ +++++++ Potri.003G204700.1 123 KWTDNIVRLLISVVACVGDDDTFDGtgglkrksgllQKKGKWKTVSKLMIGKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGtSCRVVENP 213 7************99555544433223455566888**********************************************669999999 PP trihelix 80 pyfdql 85 ++ d++ Potri.003G204700.1 214 ALMDSM 219 888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.2E-17 | 121 | 216 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MDNSGLRGRF LSDSSGGLLD LESPIHRHQQ SQLGHPSLAH QHQMNVMGCF DNDHQPSGLM 60 EMKGSTSKGY LVNFGKGRAA SPFNGAHSGD GSEDDDQSFM EDGNGENSTG AKGKQGSPWQ 120 RMKWTDNIVR LLISVVACVG DDDTFDGTGG LKRKSGLLQK KGKWKTVSKL MIGKGCHVSP 180 QQCEDKFNDL NKRYKRLNEI LGRGTSCRVV ENPALMDSMP HLSAKAKDDV RKILSSKHLF 240 YKEICAYHNG QRIPNCQDFD LQGCSLPLER CSKDMNGSGG DEVEGNDDSD DDESNNEADN 300 NADENGESVG QLCERIVNEE HSHLCSQSGR QNSFGVEMTA IFQDTNVSPW ERKEWIKKQR 360 LQLLEQRVNI KAQAFELEKQ QFKWLRYCSK KDKEFERLRL ENEMMRLENR QSAFQLRQKQ 420 LEMGLRSSEP AYDPTSLGID RVQGRDQIDL GRHH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G204700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216413 | 0.0 | AC216413.1 Populus trichocarpa clone POP035-J17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453534.1 | 0.0 | uncharacterized protein LOC7460202 | ||||
Refseq | XP_024453535.1 | 0.0 | uncharacterized protein LOC7460202 | ||||
Refseq | XP_024453536.1 | 0.0 | uncharacterized protein LOC7460202 | ||||
Refseq | XP_024453537.1 | 0.0 | uncharacterized protein LOC7460202 | ||||
TrEMBL | A0A2K2BA57 | 0.0 | A0A2K2BA57_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s20370.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 | Representative plant | OGRP2796 | 13 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 6e-65 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G204700.1 |