PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G072900.1 | ||||||||
Common Name | POPTR_0003s07050g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14143.3 Da PI: 9.2735 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.5 | 3.7e-16 | 6 | 93 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 f k+l s + ++r+ +p + ++++ +g+ sk+ ++d +g++W+++++ rk+++ l++GW eFvk +L+egD v+F++++ Potri.003G072900.1 6 FTKKL--SKTDIKHRMAVPLDSLDAFqipEGE--HSKEFGVTDIHGERWRFRCRSRKTDRFpkPALSSGWMEFVKTRDLREGDEVTFSVMDM 93 77888..77777789********999655433..6789***************999998889999***********************7653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-18 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-15 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.18 | 4 | 107 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.75E-16 | 5 | 88 | No hit | No description |
SMART | SM01019 | 1.1E-5 | 6 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-12 | 6 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MPKLLFTKKL SKTDIKHRMA VPLDSLDAFQ IPEGEHSKEF GVTDIHGERW RFRCRSRKTD 60 RFPKPALSSG WMEFVKTRDL REGDEVTFSV MDMKGAEDLE LGIQARKRIE LFGQVFWSEP 120 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G072900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213926 | 1e-108 | AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence. | |||
GenBank | AC214100 | 1e-108 | AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303143.1 | 1e-67 | B3 domain-containing transcription factor NGA1 | ||||
Refseq | XP_024448004.1 | 1e-67 | B3 domain-containing transcription factor NGA1-like | ||||
TrEMBL | B9GXZ9 | 4e-83 | B9GXZ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s07050.1 | 7e-84 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-07 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G072900.1 |
Entrez Gene | 7471607 |