PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G061600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 281aa    MW: 30585 Da    PI: 9.851
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G061600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-097396125
                        --S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                        +kt lC+ f+  G+C++G++C FaH
  Potri.003G061600.1 73 FKTQLCMKFRT-GHCSHGSKCLFAH 96
                        69*********.************* PP
2zf-CCCH20.86.6e-07118140426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          lCr f  +  C yG++C+F H+
  Potri.003G061600.1 118 NLCRMFNSGKGCTYGNKCRFLHV 140
                         6999999999************7 PP
3zf-CCCH40.16e-13176202127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC+++  tG C+yG  C+FaHg+
  Potri.003G061600.1 176 KKTRLCNNWEMTGGCPYGKVCHFAHGQ 202
                         59***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.9E-77298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8267299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-672102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-1072103IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-67396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38114142IPR000571Zinc finger, CCCH-type
SMARTSM003560.0046115141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6116143IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5117140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-7119141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619175203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-9175206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-14175206IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9176202IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5177202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSDSSPSCKY FTFSTQMVHS GSPCSTQSKG FGIVSNIGDP LRKKPRICEN NAGPSSKLLV  60
GKNNAMMTGG GSFKTQLCMK FRTGHCSHGS KCLFAHAVCD LRKALPNLRR VVVNEDKNLC  120
RMFNSGKGCT YGNKCRFLHV VPENFQKNLG QNWESSAISI GTTGTASSGG HKKGYKKTRL  180
CNNWEMTGGC PYGKVCHFAH GQQELEKSDG SIALASGIVP TKASNSLLMG KDGIGSNHKH  240
EAQATHCMFK WKALKKTRGI YADWIEDMHL LHSSLKEVEN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G061600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304152.30.0zinc finger CCCH domain-containing protein 39
TrEMBLA0A2K2B2B90.0A0A2K2B2B9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1880666
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-29C3H family protein