PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G199300.1

Common Name

POPTR_0002s20030g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 760aa MW: 86585.6 Da PI: 6.3434

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G199300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.7	1.3e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnH Potri.002G199300.1 62 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKASDDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFNNIHNH 152 6*************999887455667****************9***************98887676789********** PP FAR1 88 ela 90 el Potri.002G199300.1 153 ELL 155 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-25	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.817	540	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-7	561	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-6	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MEIMSGLTDV VKETSESGMD SCPDDIGTVE EVPEDTILSR QTSVNLVPFI GQRFVSQDAA 60 YEFYCSFAKQ CGFSIRRHRT RGKDGVGRGI TRRDFTCHRG GYPQIKASDD GKLQRNRKSS 120 RCGCQAYMRI VKRADFDVPE WRITGFNNIH NHELLKSNEV QLLPAYCTMS ADEKSRICMY 180 AKAGMSVRQM LRLMELEKGV KLGCLPFTEI DVRNLLQSFR NVNRDNDAID LLEMCKYKKD 240 NDPNFKYNFH IDANKRLEQI AWSYASSIQS YEAFGDSIIF DTTHRLDTYD MILGIWIGVD 300 NHGTNCFFGC VLLRDENTGS FSWALKTFLE FMDGKAPETI LTDQNMWLKE AISVEMPGTK 360 HAFCIWHIIA KFSDWFSVPL GSQYDKWKAE FHRLYGLQSV EDFEIGWRNM VDAYGMHGNK 420 HIVSLFALRT FWALPYLRCC FFAGMTSTFQ SESINAYIQR VLNAQSLDNF VEQVAAAVEF 480 KEPGPRQKMQ RKVHKISLKM GSPIESHAAT VLTPYAFNKL QEELVLAPQY ASLMVDESYF 540 IVRIHTDMDG GCKVIWIPHD EFISCSCHLF EFSGILCRHV LRVLSTNNCF HIPDRYLPVR 600 WRDVSTSLTK PFQTFTSEEH AEKVQLLQSM VSTLLTESIE TEERLDVACD QVAEVLSHIK 660 EFPRPGHGCN DIGYNSPSDS LILPEVEDSD GFVHGFADGN SHEPLTLGKM KERRLRDGIN 720 IFRKRRRCSV PCCGQYGHDA TDCPMMEGGD LNGDGLGFL*

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MEIMSGLTDV VKETSESGMD SCPDDIGTVE EVPEDTILSR QTSVNLVPFI GQRFVSQDAA  60
YEFYCSFAKQ CGFSIRRHRT RGKDGVGRGI TRRDFTCHRG GYPQIKASDD GKLQRNRKSS  120
RCGCQAYMRI VKRADFDVPE WRITGFNNIH NHELLKSNEV QLLPAYCTMS ADEKSRICMY  180
AKAGMSVRQM LRLMELEKGV KLGCLPFTEI DVRNLLQSFR NVNRDNDAID LLEMCKYKKD  240
NDPNFKYNFH IDANKRLEQI AWSYASSIQS YEAFGDSIIF DTTHRLDTYD MILGIWIGVD  300
NHGTNCFFGC VLLRDENTGS FSWALKTFLE FMDGKAPETI LTDQNMWLKE AISVEMPGTK  360
HAFCIWHIIA KFSDWFSVPL GSQYDKWKAE FHRLYGLQSV EDFEIGWRNM VDAYGMHGNK  420
HIVSLFALRT FWALPYLRCC FFAGMTSTFQ SESINAYIQR VLNAQSLDNF VEQVAAAVEF  480
KEPGPRQKMQ RKVHKISLKM GSPIESHAAT VLTPYAFNKL QEELVLAPQY ASLMVDESYF  540
IVRIHTDMDG GCKVIWIPHD EFISCSCHLF EFSGILCRHV LRVLSTNNCF HIPDRYLPVR  600
WRDVSTSLTK PFQTFTSEEH AEKVQLLQSM VSTLLTESIE TEERLDVACD QVAEVLSHIK  660
EFPRPGHGCN DIGYNSPSDS LILPEVEDSD GFVHGFADGN SHEPLTLGKM KERRLRDGIN  720
IFRKRRRCSV PCCGQYGHDA TDCPMMEGGD LNGDGLGFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	722	726	RKRRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G199300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302746.2	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	B9GSF4	0.0	B9GSF4_POPTR; Uncharacterized protein
STRING	POPTR_0002s20030.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Potri.002G199300.1
Entrez Gene	7478858

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]