PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G172100.1
Common NamePOPTR_0002s17310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 550aa    MW: 61068.6 Da    PI: 7.2518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G172100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.6e-13375421455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Potri.002G172100.1 375 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINELQ 421
                         799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-5346234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-15374425No hitNo description
SuperFamilySSF474591.03E-18374436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10375421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-19375435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-17377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MGGGAWNDED KTMVAAVLGS KAFNYLLSNS VANQNLLMVM CGDENLQNKL SDLVDCPNSS  60
NFSWNYAIFW QISCSKSGDW VLGWGDGSCR EPKEGEESEF TRILNIRLED ETQQRMRKRV  120
IQKLQTLFGE SDEDNYALGL DRVTDTEMFF LASMYFSFPR GEGGPGNCYA SGKHVWISDA  180
LKSGPDYCVR SFLARSAGFQ TIVLVATDVG VVELGSVRSV PESIEMVQSI RSWFSTRSSK  240
LKELRRFLNG SRLAFPGTRN RLHGSSWAQS FGLKQGTPGE VYGSQATANN LKELVNGVRE  300
EFRHNHYQGQ KQVQVQIDFS GATSGPSGIG RPLGAESEHS DVEASCKEER PGAADDRRPR  360
KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAISYINEL  420
QAKLKKMEAE RGKLEGVVRD SSTLDVNTNG ESHNQARDVD IQASHDEVMV RVSCPMDSHP  480
ASRVIQALKE AQVTVIESKL SAANDTVFHT FVIKSEGSEQ LTKEKLMAAI SFVWSCRGKV  540
RWLSSTIPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-30369431264Transcription factor MYC2
5gnj_B3e-30369431264Transcription factor MYC2
5gnj_E3e-30369431264Transcription factor MYC2
5gnj_F3e-30369431264Transcription factor MYC2
5gnj_G3e-30369431264Transcription factor MYC2
5gnj_I3e-30369431264Transcription factor MYC2
5gnj_M3e-30369431264Transcription factor MYC2
5gnj_N3e-30369431264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356364RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.109660.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G172100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876915.10.0transcription factor bHLH13
SwissprotA0A3Q7HES40.0MTB2_SOLLC; Transcription factor MTB2
TrEMBLA0A2N9HW560.0A0A2N9HW56_FAGSY; Uncharacterized protein
STRINGPOPTR_0002s17310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-169ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]