PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G129900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 361aa MW: 41745.2 Da PI: 6.5843 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.8e-16 | 31 | 113 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 d++ + l +p kf +h +kk+ + + l+ +sg +W+v+l + ++++++++GW+eFvk++ L+ +D ++Fk++++s+f v +f+ Potri.002G129900.1 31 DAGFGHHLPIPEKFS-NH-LKKKLPENVFLKGPSGGTWQVEL--TTDDDTMFFKNGWEEFVKDHFLE-KDLLIFKYNRESCF--EVLIFD 113 555667799*****7.44.45668889***************..99999***************997.9********99***..888877 PP | |||||||
2 | B3 | 47.6 | 2.9e-15 | 261 | 345 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ v++p +v ++ +v+p a++h e+k+++l+ + ++W+ k+ y+k++++ l++GW++F+ +n+L+e D+++F+ ++ Potri.002G129900.1 261 FVVVMKPTHVYRKFYMVIPSGWANRHfrT---LEKKDVILRM-KENTWNTKFLYCKSKNSGGLSSGWRNFALDNKLQEFDVCLFEPSSA 345 7899**********************532...3345666655.889********99999999***********************6544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.83E-18 | 22 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.97 | 23 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-19 | 24 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.6E-9 | 26 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.29E-17 | 31 | 113 | No hit | No description |
Pfam | PF02362 | 1.0E-12 | 31 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 256 | 358 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.77E-17 | 257 | 358 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.3E-8 | 261 | 360 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.25E-22 | 261 | 358 | No hit | No description |
Pfam | PF02362 | 4.5E-14 | 261 | 346 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 261 | 360 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGEETCEDCR SWEEELYWTH FQCTHFLQII DAGFGHHLPI PEKFSNHLKK KLPENVFLKG 60 PSGGTWQVEL TTDDDTMFFK NGWEEFVKDH FLEKDLLIFK YNRESCFEVL IFDGQSLCEK 120 AASYFVRKCG HRERDSFVHA KRKTVEDSAE VTIACPQDSL GGTAEKSAND YIYKTSVENT 180 VISEAINKKT RREIKFSKPT QTRQSVRYEE PSSTDEETET KPDVEHIPIN APYVSSRRMV 240 TEEDKLNALR LAQTAQSNEG FVVVMKPTHV YRKFYMVIPS GWANRHFRTL EKKDVILRMK 300 ENTWNTKFLY CKSKNSGGLS SGWRNFALDN KLQEFDVCLF EPSSAVNNSI VFDVSIFRVL 360 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G129900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450087.1 | 0.0 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A3N7EIL2 | 0.0 | A0A3N7EIL2_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_010400m | 1e-164 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 | Representative plant | OGRP6299 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-78 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G129900.1 |