PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G129800.1
Common NamePOPTR_0002s13130g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 431aa    MW: 48939.5 Da    PI: 7.5836
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G129800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.4e-2031113997
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +++  +rl +p  fa++  +k   + t+ l+ +sg  Wev l  + + ++ ++  GW+eFvk++ L+e+Df++Fk++g+s+f   v +f
  Potri.002G129800.1  31 HSGFDQRLAIPEIFARHLRKK--LPDTVNLKGPSGAAWEVGL--TTYNNTLFFNHGWQEFVKDHALEENDFLIFKYNGESDF--DVLMF 113
                         5667789********766644..888****************..999999****************************9999..66555 PP
2B338.32.4e-12312392183
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                         f+  ++p +v  +  + +p   +++h   +g+  +++ l++   + r W  ++ y k+++   lt+GWk+F+ +n+L e D++vF+
  Potri.002G129800.1 312 FLVLMKPTHVYGRFFVAIPSAWLATHlpiKGN--QDVILRF---KDRAWHTRFFYHKSRNNGGLTAGWKKFALDNNLHEFDVCVFE 392
                         677899999999**9***********744333..4444444...5599999999999999999**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.46723116IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-2024114IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-1426116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-2230115IPR015300DNA-binding pseudobarrel domain
PfamPF023629.9E-1731110IPR003340B3 DNA binding domain
CDDcd100172.91E-1731114No hitNo description
Gene3DG3DSA:2.40.330.102.2E-16310409IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.56312411IPR003340B3 DNA binding domain
PfamPF023627.7E-11312392IPR003340B3 DNA binding domain
CDDcd100172.13E-18312409No hitNo description
SMARTSM010192.8E-6312411IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-14312396IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGEETCKECR SWEEKIYWTH FQCVQFSQFL HSGFDQRLAI PEIFARHLRK KLPDTVNLKG  60
PSGAAWEVGL TTYNNTLFFN HGWQEFVKDH ALEENDFLIF KYNGESDFDV LMFDMQSMCE  120
KVAPYFVKKY ESAERGNGCR TKRKTVKSSV GVVYASPKGV VGGSQPEEFK DNDTDAIPVG  180
QPIVSRVTDK KICRGIKSTE GTEEDVVGGS QQEECTYNGS DTIPPLRQPI ISPFGKKKIS  240
REIKSIKPVQ YWRVVKSRGP STREEIEAEP DVQSLGQPVD TVHHARKGRE VTEEEKRNAV  300
QLAARAVTEN GFLVLMKPTH VYGRFFVAIP SAWLATHLPI KGNQDVILRF KDRAWHTRFF  360
YHKSRNNGGL TAGWKKFALD NNLHEFDVCV FEPLDLVNYP IILNVSIFRV VEEASPITSQ  420
EDEKKSQGHA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G129800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301205.20.0B3 domain-containing protein REM16 isoform X1
TrEMBLB9GNZ50.0B9GNZ5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Representative plantOGRP1491534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-46B3 family protein