PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G119200.1
Common NamePOPTR_0002s12000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 363aa    MW: 40304.7 Da    PI: 4.3862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G119200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-102883281055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y++ Lq
  Potri.002G119200.1 288 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVNFLQ 328
                         9******************97.....8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.596278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-13279342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-12283337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-11284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-11287332No hitNo description
PfamPF000101.8E-7288328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNTQAMEAFR DGELWNFSRM FSMEEPDCTP ELLGQCSFLQ DTDEGLHFTI PSAFFPAPES  60
DASMAEDESL FYSWHTPNPN LHFDSQESSN NSNSSSSVFL PYSSHESYFF NDSNPIQATN  120
NNSMSMDIMD EENIGLFMPL FPEIAMAETA CMNGDMSGDK TGDLDDNLKP AANDVLAKGL  180
QLKRKLDVPE PIANTLDDMK KKARVTRNVQ KTRKVGQSKK NQKNAPDISH DEEESNAGPD  240
GQSSSSCSSE EDNASQDSDS KVSGVLNSNG KTRATRGAAT DPQSLYARKR RERINERLKI  300
LQNLVPNGTK VDISTMLEEA VHYVNFLQLQ IKLLSSDDLW MYAPLAYNGI DIGLNQKLSM  360
FL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G119200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999863.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A3N7EKH30.0A0A3N7EKH3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-57ROOT HAIR DEFECTIVE 6-LIKE 2