PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G249900.1 | ||||||||
Common Name | POPTR_0001s25700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 381aa MW: 42654.2 Da PI: 8.8707 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.7e-05 | 142 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++F + +L++H+ H Potri.001G249900.1 142 FPCTACGEVFQKPQLLEQHQAIkH 165 89******************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.785 | 142 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 144 | 165 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 9.59E-12 | 167 | 379 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 5.2E-5 | 314 | 379 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MATNRGLVFN KFLSFFILLL HLGCFIFKAK LDDRHPAKKR KKVSPLAPIS SSHSRLKPHK 60 ALSSSWSYLK SIFSGKTSKT QTQPAAPTLT SARSSQQSIV SMILPDQTHL SELPPRKKST 120 GSCEEPDIST DHQFFPLRND IFPCTACGEV FQKPQLLEQH QAIKHAVTQL LDGDSGKNIV 180 DIIFKTGWSC KEKSPEIRRI LKIHNSPKIL SRFEEYREFV KTKAARNSPI KRRDERCIAD 240 GNELLRFFCS TFMCDLGLNG DSSICNQQYC SVCGIIKSGF SPKMDGISTL STSWRAHMAF 300 PEEIEEEFKF MNVKRAMLVC RVVAGRIGCD LDEDIDKQDS GSDSVLGRGG SGIHTRVDEE 360 ELLVFNPRAV LPCFVIVYTV * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 41 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.13628 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G249900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299819.2 | 0.0 | uncharacterized protein LOC7478541 | ||||
TrEMBL | B9GIT8 | 0.0 | B9GIT8_POPTR; C2H2 family protein | ||||
STRING | POPTR_0001s25700.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 | Representative plant | OGRP9661 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-121 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G249900.1 |
Entrez Gene | 7478541 |