PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.001G189800.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 370aa MW: 40092.8 Da PI: 7.4266 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.9e-13 | 110 | 154 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar + Rt+ q+ s+ qk+ Potri.001G189800.2 110 PWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKF 154 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.306 | 103 | 159 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-16 | 105 | 160 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-18 | 106 | 158 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-11 | 107 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-10 | 107 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-8 | 110 | 155 | No hit | No description |
Pfam | PF00249 | 4.6E-10 | 110 | 153 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 370 aa Download sequence Send to blast |
MTRRCSHCSN NGHNSRTCPT RSSLASSSSS PLSGVKLFGV RLTDGSIIKK SASMGNLSAH 60 YHSSSSAAAS PNPDSPVSDR VHDDGYLSDD PAAHASCSTS RRGDRKKGVP WTEEEHRLFL 120 IGLQKLGKGD WRGIARNFVV SRTPTQVASH AQKFFIRQSN ATRRKRRSSL FDMVPEMATD 180 PQPVPEEQEL PSSQAGDDDN VDALPSLNLS LKPEFEPMDT ESQELVKERD KTVMGFSEFK 240 PSVPSSSEFV PIVSGSNEFT AVPGFFPAYM PVPYPYWAPN TTPFEEGKGA ATSHHEVLKP 300 VPSILKEPFN VDELVGMSHL SLGEIERRHR EPSPLSLKLI GEAPRQSAFH ASAPASGSDL 360 SNGKVAPKG* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.6193 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.001G189800.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF148241 | 0.0 | EF148241.1 Populus trichocarpa x Populus deltoides clone WS01312_B18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024449522.1 | 0.0 | transcription factor MYBS3 isoform X2 | ||||
Swissprot | Q7XC57 | 4e-96 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A2K2C042 | 0.0 | A0A2K2C042_POPTR; Uncharacterized protein | ||||
TrEMBL | A9PIL7 | 0.0 | A9PIL7_9ROSI; Uncharacterized protein | ||||
STRING | POPTR_0001s19070.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16350.1 | 1e-102 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.001G189800.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|