PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G013600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 565aa    MW: 63945.6 Da    PI: 10.0456
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G013600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-111767347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                        +WTt E++ll++av+++G+++W++Ia ++         +t  +c+++++++
  Potri.001G013600.1 17 PWTTLEELLLACAVNRHGSDSWDSIAMELSnrtstfSSLTSQNCIDKFNDL 67
                        8*****************************777777777777777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-6850IPR009057Homeodomain-like
SMARTSM007177.7E-71470IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-61470IPR009057Homeodomain-like
PROSITE profilePS500906.4931668IPR017877Myb-like domain
PfamPF002492.2E-101767IPR001005SANT/Myb domain
CDDcd001675.41E-61868No hitNo description
SMARTSM002972.3E-1181424IPR001487Bromodomain
SuperFamilySSF473704.06E-17323426IPR001487Bromodomain
CDDcd043691.15E-13327419No hitNo description
Gene3DG3DSA:1.20.920.103.4E-14328427IPR001487Bromodomain
PfamPF004393.4E-10334404IPR001487Bromodomain
PROSITE profilePS5001411.878334405IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAKQQQQQQQ QPSPPSPWTT LEELLLACAV NRHGSDSWDS IAMELSNRTS TFSSLTSQNC  60
IDKFNDLKRR YGFTSLRNDT ASLVDELRKL RVDELRREVH RRDASIVSLE MKVKRLEEDR  120
ERSLKEMEKS SDLAKPSPEI VAGKSDGGES GDGDERSFNE SNSTSQQPQK AEAETEKEQN  180
ANTELKPEPD VIREDPDPSR LGSDPEPERE WSHNGKLEDD DDKKPKKEMK IERLSRESGL  240
GPDSNELGES VGESKREDKE KDNIKQIINN NNNSDVQSSV SLTMRKKKRR RSSEEGSSSG  300
EEEREGGDGE VSPARKNVPA VKSEPWLKLL GIIRSHRLGS VFEKRLRSQE SERYRKMVRQ  360
HMDLQMIQSR LNKGVYSNCF QKFFKDLLIL LNNAIVFFRK NSPENLAANE LRAVVLKEVK  420
EKLRKPKPQP VDAKPATEQH SAALSRPNKS SSSTLVACCK HSSMKAISGG AGKKGDKEME  480
GKHKVNEKKV EVSIDRIEEK GLKKKTTKER SVSGRRNSKT SNKNGEIKHQ YGGNELSSVH  540
MMRWRLRWIG KNTQGGRSKE QRAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283290MRKKKRRR
2284290RKKKRRR
3285290KKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G013600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164540.0AC216454.1 Populus trichocarpa clone POP028-J04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297663.30.0uncharacterized protein LOC7483276
TrEMBLA0A2K2BQR70.0A0A2K2BQR7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s05110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.15e-32DNA-binding bromodomain-containing protein