PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G178100.1
Common NamePHAVU_011G178100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 283aa    MW: 31430.8 Da    PI: 7.2545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G178100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09756154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r++ +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL  +++ +k+L
  Phvul.011G178100.1  7 RKTQKADREKLRRDRLNEQFVELGNVLDPD----RPKNDKATILGDTIHLLKDL 56
                        6788999*******************9997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-13576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.697656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-13679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-7756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-7756No hitNo description
SMARTSM003531.3E-61262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDCSAARKTQ KADREKLRRD RLNEQFVELG NVLDPDRPKN DKATILGDTI HLLKDLTSHV  60
SKLKEEYATL NEESRELTQE KNDLREEKAS LKSDIENLNN QYQQQLRTMF PWTAMDHSVV  120
MAPPSYPFPM PMAVPPGPIP MQPFPYFANQ HPAVISNPHS TFVPYLAPNT IVEQQSTQYV  180
SPPLHPGSRS NVSEKQESKS KSFRESKAEK NEDSNDVTTD LQLKTPGSSG DQDLSSGQRK  240
SGKLSRRESS CCSGGNSLGR SSSHSAQDSS SSSTVASRKH NE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G178100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133432.10.0hypothetical protein PHAVU_011G178100g
SwissprotQ9LT239e-92BH121_ARATH; Transcription factor bHLH121
TrEMBLV7AMR70.0V7AMR7_PHAVU; Uncharacterized protein
STRINGXP_007133432.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.18e-85bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]