PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G099100.1
Common NamePHAVU_011G099100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 734aa    MW: 79675.3 Da    PI: 7.7161
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G099100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-094384751954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Phvul.011G099100.1 438 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 475
                         554459******************************88 PP
2BELL119.91.1e-38302373172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +rqelq+kk+kL+s+l+eV++rY+qy++q+q+v+ sFe++ag+g+ak+Yt+lAl++iS++FrcLkdai++qi
  Phvul.011G099100.1 302 QRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVVTSFEQAAGVGAAKSYTALALRTISKQFRCLKDAISSQI 373
                         69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.1E-62224371IPR006563POX domain
PfamPF075262.0E-48231370IPR006563POX domain
PROSITE profilePS5007112.082416479IPR001356Homeobox domain
CDDcd000867.48E-13419480No hitNo description
SMARTSM003897.8E-10419483IPR001356Homeobox domain
SuperFamilySSF466897.27E-17420485IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28422485IPR009057Homeodomain-like
PfamPF059205.1E-18436475IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MATYFHGSTS EIPSSAEGLQ TLYLMNPNYV PYSDAAQHPA QNMLLVNSNN ASNTSPTSAN  60
ALNLGNFTHA PPPPSPNNHR DQQHHHHLIG LTIPSSNIIG SNTATGDHAR PSFLGHHEFS  120
GFHGGATAAT TASTSRSNYN LWGSIFDQSA SNMVATTNTP SENMGCVASA VTASTQIGFH  180
RPNHLSLSLS SQQTPYRSLS GDVHAISPAS LGGDDMRGLQ NGVSSMHSVA LGSKYLKSTQ  240
ELLDEVVNVG KGISKGRESM EGAKKEKMKG NIESTSGVGD GSSCGGENND GGKQGGELGT  300
AQRQELQMKK SKLVSMLDEV EQRYRQYHHQ MQIVVTSFEQ AAGVGAAKSY TALALRTISK  360
QFRCLKDAIS SQIKTASKTL GEDDCLGVKV ESSRLRYVDH QLRQQRALQQ LGMIQHNAWR  420
PQRGLPERAV SVLRAWLFEH FLHPYPKDSD KVMLAKQTGL TRSQVSNWFI NARVRLWKPM  480
VEEMYLEEVK QEPNNGSQDN NTNRSKENNK ELWSEANAAT HESGGLRLNQ INVLQSKAES  540
FNNNQTTSPT EISNSNSLST SPMGGGGGGS LQSGFHLGDM QSPKRPRSTS EMQNSPGSIL  600
SVDMEMKPHG ETNTREGTNT KFGIENHSGG FGAFPMEDIG RFHHVSEQLA PRFHGNGVSL  660
TLGLPHSENL TLSGTQHGFL SPNMHLGMRT TNENEFCGAI NTPPSSHSAT SYDNIDIQNR  720
KRFAAQLLRD FVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16425482158Homeobox protein Meis1
4xrs_B1e-16425482158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G099100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132496.10.0hypothetical protein PHAVU_011G099100g
RefseqXP_007132497.10.0hypothetical protein PHAVU_011G099100g
TrEMBLV7AGT90.0V7AGT9_PHAVU; Uncharacterized protein
STRINGXP_007132496.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-113BEL1-like homeodomain 1